The effects of disruption of phosphoglucose isomerase gene on carbon utilisation and cellulase production in Trichoderma reesei Rut-C30

af Limón, M Carmen, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja
Udgivet 2011

The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei

af Häkkinen, Mari, Sivasiddarthan, Dhinakaran, Aro, Nina, Saloheimo, Markku, Pakula, Tiina M
Udgivet i Microb Cell Fact (2015)

Cloning and Characterization of the Glucosidase II Alpha Subunit Gene of Trichoderma reesei: a Frameshift Mutation Results in the Aberrant Glycosylation Profile of the Hypercellulo...

af Geysens, Steven, Pakula, Tiina, Uusitalo, Jaana, Dewerte, Isabelle, Penttilä, Merja, Contreras, Roland
Udgivet 2005

(13)C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

af Jouhten, Paula, Pitkänen, Esa, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja, Maaheimo, Hannu
Udgivet 2009

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties

af Vitikainen, Marika, Arvas, Mikko, Pakula, Tiina, Oja, Merja, Penttilä, Merja, Saloheimo, Markku
Udgivet 2010

TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum

af Gimeno, Alejandro, Sohlberg, Elina, Pakula, Tiina, Limnell, Jenni, Keller, Beat, Laitila, Arja, Vogelgsang, Susanne
Udgivet i Front Microbiol (2019)

Corrigendum: TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum

af Gimeno, Alejandro, Sohlberg, Elina, Pakula, Tiina, Limnell, Jenni, Keller, Beat, Laitila, Arja, Vogelgsang, Susanne
Udgivet i Front Microbiol (2019)

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

af Häkkinen, Mari, Arvas, Mikko, Oja, Merja, Aro, Nina, Penttilä, Merja, Saloheimo, Markku, Pakula, Tiina M
Udgivet 2012

Genome wide analysis of protein production load in Trichoderma reesei

af Pakula, Tiina M., Nygren, Heli, Barth, Dorothee, Heinonen, Markus, Castillo, Sandra, Penttilä, Merja, Arvas, Mikko
Udgivet i Biotechnol Biofuels (2016)

Common features and interesting differences in transcriptional responses to secretion stress in the fungi Trichoderma reesei and Saccharomyces cerevisiae

af Arvas, Mikko, Pakula, Tiina, Lanthaler, Karin, Saloheimo, Markku, Valkonen, Mari, Suortti, Tapani, Robson, Geoff, Penttilä, Merja
Udgivet 2006

Characterization of Secretory Genes ypt1/yptA and nsf1/nsfA from Two Filamentous Fungi: Induction of Secretory Pathway Genes of Trichoderma reesei under Secretion Stress Conditions

af Saloheimo, Markku, Wang, Huaming, Valkonen, Mari, Vasara, Tuija, Huuskonen, Anne, Riikonen, Marjukka, Pakula, Tiina, Ward, Michael, Penttilä, Merja
Udgivet 2004

Machine Learning of Protein Interactions in Fungal Secretory Pathways

af Kludas, Jana, Arvas, Mikko, Castillo, Sandra, Pakula, Tiina, Oja, Merja, Brouard, Céline, Jäntti, Jussi, Penttilä, Merja, Rousu, Juho
Udgivet i PLoS One (2016)

Correlation of gene expression and protein production rate - a system wide study

af Arvas, Mikko, Pakula, Tiina, Smit, Bart, Rautio, Jari, Koivistoinen, Heini, Jouhten, Paula, Lindfors, Erno, Wiebe, Marilyn, Penttilä, Merja, Saloheimo, Markku
Udgivet 2011

Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production

af Häkkinen, Mari, Valkonen, Mari J, Westerholm-Parvinen, Ann, Aro, Nina, Arvas, Mikko, Vitikainen, Marika, Penttilä, Merja, Saloheimo, Markku, Pakula, Tiina M
Udgivet 2014

Transformation System for Hypocrea jecorina (Trichoderma reesei) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers

af Steiger, Matthias G., Vitikainen, Marika, Uskonen, Pekka, Brunner, Kurt, Adam, Gerhard, Pakula, Tiina, Penttilä, Merja, Saloheimo, Markku, Mach, Robert L., Mach-Aigner, Astrid R.
Udgivet 2011

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

af Castillo, Sandra, Barth, Dorothee, Arvas, Mikko, Pakula, Tiina M., Pitkänen, Esa, Blomberg, Peter, Seppanen-Laakso, Tuulikki, Nygren, Heli, Sivasiddarthan, Dhinakaran, Penttilä, Merja, Oja, Merja
Udgivet i Biotechnol Biofuels (2016)

Detecting novel genes with sparse arrays

af Arvas, Mikko, Haiminen, Niina, Smit, Bart, Rautio, Jari, Vitikainen, Marika, Wiebe, Marilyn, Martinez, Diego, Chee, Christine, Kunkel, Joe, Sanchez, Charles, Nelson, Mary Anne, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja, Kivioja, Teemu
Udgivet 2010

The 2008 update of the Aspergillus nidulans genome annotation: a community effort

af Wortman, Jennifer Russo, Gilsenan, Jane Mabey, Joardar, Vinita, Deegan, Jennifer, Clutterbuck, John, Andersen, Mikael R., Archer, David, Bencina, Mojca, Braus, Gerhard, Coutinho, Pedro, von Döhren, Hans, Doonan, John, Driessen, Arnold J.M., Durek, Pawel, Espeso, Eduardo, Fekete, Erzsébet, Flipphi, Michel, Estrada, Carlos Garcia, Geysens, Steven, Goldman, Gustavo, de Groot, Piet W.J., Hansen, Kim, Harris, Steven D., Heinekamp, Thorsten, Helmstaedt, Kerstin, Henrissat, Bernard, Hofmann, Gerald, Homan, Tim, Horio, Tetsuya, Horiuchi, Hiroyuki, James, Steve, Jones, Meriel, Karaffa, Levente, Karányi, Zsolt, Kato, Masashi, Keller, Nancy, Kelly, Diane E., Kiel, Jan A.K.W., Kim, Jung-Mi, van der Klei, Ida J., Klis, Frans M., Kovalchuk, Andriy, Kraševec, Nada, Kubicek, Christian P., Liu, Bo, MacCabe, Andrew, Meyer, Vera, Mirabito, Pete, Miskei, Márton, Mos, Magdalena, Mullins, Jonathan, Nelson, David R., Nielsen, Jens, Oakley, Berl R., Osmani, Stephen A., Pakula, Tiina, Paszewski, Andrzej, Paulsen, Ian, Pilsyk, Sebastian, Pócsi, István, Punt, Peter J., Ram, Arthur F.J., Ren, Qinghu, Robellet, Xavier, Robson, Geoff, Seiboth, Bernhard, Solingen, Piet van, Specht, Thomas, Sun, Jibin, Taheri-Talesh, Naimeh, Takeshita, Norio, Ussery, Dave, vanKuyk, Patricia A., Visser, Hans, van de Vondervoort, Peter J.I., de Vries, Ronald P., Walton, Jonathan, Xiang, Xin, Xiong, Yi, Zeng, An Ping, Brandt, Bernd W., Cornell, Michael J., van den Hondel, Cees A.M.J.J., Visser, Jacob, Oliver, Stephen G., Turner, Geoffrey
Udgivet 2008