Qualitative causal analyses of biosimulation models

av Neal, Maxwell L., Gennari, John H., Cook, Daniel L.
I publikationen CEUR Workshop Proc (2016)

Multiple Ontologies in Action: Composite Annotations for Biosimulation Models

av Gennari, John H., Neal, Maxwell L., Galdzicki, Michal, Cook, Daniel L.
Publicerad 2010

INTEGRATION OF MULTI-SCALE BIOSIMULATION MODELS VIA LIGHT-WEIGHT SEMANTICS

av GENNARI, JOHN H., NEAL, MAXWELL L., CARLSON, BRIAN E., COOK, DANIEL L.
Publicerad 2008

Ontology of physics for biology: representing physical dependencies as a basis for biological processes

av Cook, Daniel L, Neal, Maxwell L, Bookstein, Fred L, Gennari, John H
Publicerad 2013

Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology

av Cook, Daniel L., Mejino, Jose L. V., Neal, Maxwell L., Gennari, John H.
Publicerad 2008

Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies

av Cook, Daniel L., Mejino, Jose L. V., Neal, Maxwell L., Gennari, John H.
Publicerad 2009

Open modeling and exchange (OMEX) metadata specification version 1.0

av Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
I publikationen J Integr Bioinform (2020)

Representing physiological processes and their participants with PhysioMaps

av Cook, Daniel L, Neal, Maxwell L, Hoehndorf, Robert, Gkoutos, Georgios V, Gennari, John H
Publicerad 2013

JSim, an open-source modeling system for data analysis

av Butterworth, Erik, Jardine, Bartholomew E., Raymond, Gary M., Neal, Maxwell L., Bassingthwaighte, James B.
Publicerad 2013

Coupling of a 3D Finite Element Model of Cardiac Ventricular Mechanics to Lumped Systems Models of the Systemic and Pulmonic Circulation

av Kerckhoffs, Roy C. P., Neal, Maxwell L., Gu, Quan, Bassingthwaighte, James B., Omens, Jeff H., McCulloch, Andrew D.
Publicerad 2006

Multiscale Modeling and Data Integration in the Virtual Physiological Rat Project

av Beard, Daniel A., Neal, Maxwell L., Tabesh-Saleki, Nazanin, Thompson, Christopher T., Bassingtwaighte, James B., Shimoyama, Mary, Carlson, Brian E.
Publicerad 2012

SemGen: a tool for semantics-based annotation and composition of biosimulation models

av Neal, Maxwell L, Thompson, Christopher T, Kim, Karam G, James, Ryan C, Cook, Daniel L, Carlson, Brian E, Gennari, John H
I publikationen Bioinformatics (2019)

A systems-level gene regulatory network model for Plasmodium falciparum

av Neal, Maxwell L, Wei, Ling, Peterson, Eliza, Arrieta-Ortiz, Mario L, Danziger, Samuel A, Baliga, Nitin S, Kaushansky, Alexis, Aitchison, John D
I publikationen Nucleic Acids Res (2021)

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems

av Neal, Maxwell L., Cooling, Michael T., Smith, Lucian P., Thompson, Christopher T., Sauro, Herbert M., Carlson, Brian E., Cook, Daniel L., Gennari, John H.
Publicerad 2014

Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases

av Neal, Maxwell L., Carlson, Brian E., Thompson, Christopher T., James, Ryan C., Kim, Karam G., Tran, Kenneth, Crampin, Edmund J., Cook, Daniel L., Gennari, John H.
I publikationen PLoS One (2015)

Model annotation and discovery with the Physiome Model Repository

av Sarwar, Dewan M., Kalbasi, Reza, Gennari, John H., Carlson, Brian E., Neal, Maxwell L., Bono, Bernard de, Atalag, Koray, Hunter, Peter J., Nickerson, David P.
I publikationen BMC Bioinformatics (2019)

A patient-specific computational model of hypoxia-modulated radiation resistance in glioblastoma using (18)F-FMISO-PET

av Rockne, Russell C., Trister, Andrew D., Jacobs, Joshua, Hawkins-Daarud, Andrea J., Neal, Maxwell L., Hendrickson, Kristi, Mrugala, Maciej M., Rockhill, Jason K., Kinahan, Paul, Krohn, Kenneth A., Swanson, Kristin R.
I publikationen J R Soc Interface (2015)

Addendum to ‘A patient-specific computational model of hypoxia-modulated radiation resistance in glioblastoma using (18)F-FMISO-PET’

av Rockne, Russell C., Trister, Andrew D., Jacobs, Joshua, Hawkins-Daarud, Andrea J., Neal, Maxwell L., Hendrickson, Kristi, Mrugala, Maciej M., Rockhill, Jason K., Kinahan, Paul, Krohn, Kenneth A., Swanson, Kristin R.
I publikationen J R Soc Interface (2015)

Defining the proteolytic landscape during enterovirus infection

av Saeed, Mohsan, Kapell, Sebastian, Hertz, Nicholas T., Wu, Xianfang, Bell, Kierstin, Ashbrook, Alison W., Mark, Milica Tesic, Zebroski, Henry A., Neal, Maxwell L., Flodström-Tullberg, Malin, MacDonald, Margaret R., Aitchison, John D., Molina, Henrik, Rice, Charles M.
I publikationen PLoS Pathog (2020)