Modeling stochastic gene expression: Implications for haploinsufficiency

Por Cook, Daniel L., Gerber, Anthony N., Tapscott, Stephen J.
Publicado em 1998

A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems

Por Cook, Daniel L, Farley, Joel F, Tapscott, Stephen J
Publicado em 2001

Physical Properties of Biological Entities: An Introduction to the Ontology of Physics for Biology

Por Cook, Daniel L., Bookstein, Fred L., Gennari, John H.
Publicado em 2011

Qualitative causal analyses of biosimulation models

Por Neal, Maxwell L., Gennari, John H., Cook, Daniel L.
Publicado no CEUR Workshop Proc (2016)

Advances in Semantic Representation for Multiscale Biosimulation: A Case Study in Merging Models

Por Neal, Maxwell Lewis, Gennari, John H., Arts, Theo, Cook, Daniel L.
Publicado em 2009

Multiple Ontologies in Action: Composite Annotations for Biosimulation Models

Por Gennari, John H., Neal, Maxwell L., Galdzicki, Michal, Cook, Daniel L.
Publicado em 2010

INTEGRATION OF MULTI-SCALE BIOSIMULATION MODELS VIA LIGHT-WEIGHT SEMANTICS

Por GENNARI, JOHN H., NEAL, MAXWELL L., CARLSON, BRIAN E., COOK, DANIEL L.
Publicado em 2008

Ontology of physics for biology: representing physical dependencies as a basis for biological processes

Por Cook, Daniel L, Neal, Maxwell L, Bookstein, Fred L, Gennari, John H
Publicado em 2013

Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology

Por Cook, Daniel L., Mejino, Jose L. V., Neal, Maxwell L., Gennari, John H.
Publicado em 2008

Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies

Por Cook, Daniel L., Mejino, Jose L. V., Neal, Maxwell L., Gennari, John H.
Publicado em 2009

A Strategy for Improving and Integrating Biomedical Ontologies

Por Rosse, Cornelius, Kumar, Anand, Mejino, Jose LV, Cook, Daniel L, Detwiler, Landon T, Smith, Barry
Publicado em 2005

Representing physiological processes and their participants with PhysioMaps

Por Cook, Daniel L, Neal, Maxwell L, Hoehndorf, Robert, Gkoutos, Georgios V, Gennari, John H
Publicado em 2013

BaroFuse, a novel pressure-driven, adjustable-throughput perfusion system for tissue maintenance and assessment

Por Rountree, Austin, Karkamkar, Amit, Khalil, Gamal, Folch, Albert, Cook, Daniel L., Sweet, Ian R.
Publicado no Heliyon (2016)

Ontology-Based Representation of Simulation Models of Physiology

Por Rubin, Daniel L., Grossman, David, Neal, Maxwell, Cook, Daniel L., Bassingthwaighte, James B., Musen, Mark A.
Publicado em 2006

Integrating systems biology models and biomedical ontologies

Por Hoehndorf, Robert, Dumontier, Michel, Gennari, John H, Wimalaratne, Sarala, de Bono, Bernard, Cook, Daniel L, Gkoutos, Georgios V
Publicado em 2011

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems

Por Neal, Maxwell L., Cooling, Michael T., Smith, Lucian P., Thompson, Christopher T., Sauro, Herbert M., Carlson, Brian E., Cook, Daniel L., Gennari, John H.
Publicado em 2014

Quantification of Low-Level Drug Effects Using Real-Time, in vitro Measurement of Oxygen Consumption Rate

Por Neal, Adam, Rountree, Austin M., Philips, Craig W., Kavanagh, Terrance J., Williams, Dominic P., Newham, Peter, Khalil, Gamal, Cook, Daniel L., Sweet, Ian R.
Publicado no Toxicol Sci (2015)

Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases

Por Neal, Maxwell L., Carlson, Brian E., Thompson, Christopher T., James, Ryan C., Kim, Karam G., Tran, Kenneth, Crampin, Edmund J., Cook, Daniel L., Gennari, John H.
Publicado no PLoS One (2015)