Computational approaches to species phylogeny inference and gene tree reconciliation

Por Nakhleh, Luay
Publicado em 2013

Species Tree Inference by Minimizing Deep Coalescences

Por Than, Cuong, Nakhleh, Luay
Publicado em 2009

The strength of chemical linkage as a criterion for pruning metabolic graphs

Por Zhou, Wanding, Nakhleh, Luay
Publicado em 2011

Properties of metabolic graphs: biological organization or representation artifacts?

Por Zhou, Wanding, Nakhleh, Luay
Publicado em 2011

Convergent evolution of modularity in metabolic networks through different community structures

Por Zhou, Wanding, Nakhleh, Luay
Publicado em 2012

ncDNA and drift drive binding site accumulation

Por Ruths, Troy, Nakhleh, Luay
Publicado em 2012

Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topology

Por Ruths, Troy, Nakhleh, Luay
Publicado em 2013

An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data

Por Berestovsky, Natalie, Nakhleh, Luay
Publicado em 2013

Boosting forward-time population genetic simulators through genotype compression

Por Ruths, Troy, Nakhleh, Luay
Publicado em 2013

A maximum pseudo-likelihood approach for phylogenetic networks

Por Yu, Yun, Nakhleh, Luay
Publicado no BMC Genomics (2015)

Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria

Por Park, Hyun Jung, Nakhleh, Luay
Publicado em 2012

Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle

Por Ruths, Derek, Nakhleh, Luay, Ram, Prahlad T
Publicado em 2008

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

Por Than, Cuong, Ruths, Derek, Nakhleh, Luay
Publicado em 2008

GS(2): an efficiently computable measure of GO-based similarity of gene sets

Por Ruths, Troy, Ruths, Derek, Nakhleh, Luay
Publicado em 2009

Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles

Por Yu, Yun, Warnow, Tandy, Nakhleh, Luay
Publicado em 2011

Gene Duplicability-Connectivity-Complexity across Organisms and a Neutral Evolutionary Explanation

Por Zhu, Yun, Du, Peng, Nakhleh, Luay
Publicado em 2012

Evolution After Whole-Genome Duplication: A Network Perspective

Por Zhu, Yun, Lin, Zhenguo, Nakhleh, Luay
Publicado em 2013

Fast algorithms and heuristics for phylogenomics under ILS and hybridization

Por Yu, Yun, Ristic, Nikola, Nakhleh, Luay
Publicado em 2013

Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent

Por Wen, Dingqiao, Yu, Yun, Nakhleh, Luay
Publicado no PLoS Genet (2016)

Exploring phylogenetic hypotheses via Gibbs sampling on evolutionary networks

Por Yu, Yun, Jermaine, Christopher, Nakhleh, Luay
Publicado no BMC Genomics (2016)