Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions

nork Saito, Yutaka, Mituyama, Toutai
Argitaratua izan da BMC Genomics (2015)

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions

nork Saito, Yutaka, Tsuji, Junko, Mituyama, Toutai
Argitaratua 2014

Directed acyclic graph kernels for structural RNA analysis

nork Sato, Kengo, Mituyama, Toutai, Asai, Kiyoshi, Sakakibara, Yasubumi
Argitaratua 2008

CentroidFold: a web server for RNA secondary structure prediction

nork Sato, Kengo, Hamada, Michiaki, Asai, Kiyoshi, Mituyama, Toutai
Argitaratua 2009

Prediction of Conserved Precursors of miRNAs and Their Mature Forms by Integrating Position-Specific Structural Features

nork Terai, Goro, Okida, Hiroaki, Asai, Kiyoshi, Mituyama, Toutai
Argitaratua 2012

Epigenetic silencing of V(D)J recombination is a major determinant for selective differentiation of mucosal-associated invariant t cells from induced pluripotent stem cells

nork Saito, Yutaka, Sugimoto, Chie, Mituyama, Toutai, Wakao, Hiroshi
Argitaratua izan da PLoS One (2017)

Predictions of RNA secondary structure by combining homologous sequence information

nork Hamada, Michiaki, Sato, Kengo, Kiryu, Hisanori, Mituyama, Toutai, Asai, Kiyoshi
Argitaratua 2009

Discovery of short pseudogenes derived from messenger RNAs

nork Terai, Goro, Yoshizawa, Aya, Okida, Hiroaki, Asai, Kiyoshi, Mituyama, Toutai
Argitaratua 2010

MENε/β noncoding RNAs are essential for structural integrity of nuclear paraspeckles

nork Sasaki, Yasnory T. F., Ideue, Takashi, Sano, Miho, Mituyama, Toutai, Hirose, Tetsuro
Argitaratua 2009

Biogenesis pathways of piRNAs loaded onto AGO3 in the Drosophila testis

nork Nagao, Akihiro, Mituyama, Toutai, Huang, Haidong, Chen, Dahua, Siomi, Mikiko C., Siomi, Haruhiko
Argitaratua 2010

Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing

nork Azuma-Mukai, Asuka, Oguri, Hideo, Mituyama, Toutai, Qian, Zhi Rong, Asai, Kiyoshi, Siomi, Haruhiko, Siomi, Mikiko C.
Argitaratua 2008

Software.ncrna.org: web servers for analyses of RNA sequences

nork Asai, Kiyoshi, Kiryu, Hisanori, Hamada, Michiaki, Tabei, Yasuo, Sato, Kengo, Matsui, Hiroshi, Sakakibara, Yasubumi, Terai, Goro, Mituyama, Toutai
Argitaratua 2008

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs

nork Mituyama, Toutai, Yamada, Kouichirou, Hattori, Emi, Okida, Hiroaki, Ono, Yukiteru, Terai, Goro, Yoshizawa, Aya, Komori, Takashi, Asai, Kiyoshi
Argitaratua 2009

Methylome, transcriptome, and PPARγ cistrome analyses reveal two epigenetic transitions in fat cells

nork Takada, Hitomi, Saito, Yutaka, Mituyama, Toutai, Wei, Zong, Yoshihara, Eiji, Jacinto, Sandra, Downes, Michael, Evans, Ronald M, Kida, Yasuyuki S
Argitaratua 2014

Functional involvement of Tudor and dPRMT5 in the piRNA processing pathway in Drosophila germlines

nork Nishida, Kazumichi M, Okada, Tomoko N, Kawamura, Takeshi, Mituyama, Toutai, Kawamura, Yoshinori, Inagaki, Sachi, Huang, Haidong, Chen, Dahua, Kodama, Tatsuhiko, Siomi, Haruhiko, Siomi, Mikiko C
Argitaratua 2009