Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions

od Levitsky, Victor G, Ignatieva, Elena V, Ananko, Elena A, Turnaev, Igor I, Merkulova, Tatyana I, Kolchanov, Nikolay A, Hodgman, TC
Wydane 2007

Ortho-Aminoazotoluene activates mouse Constitutive Androstane Receptor (mCAR) and increases expression of mCAR target genes

od Smetanina, Mariya A., Pakharukova, Mariya Y., Kurinna, Svitlana M., Dong, Bingning, Hernandez, Juan P., Moore, David D., Merkulova, Tatyana I.
Wydane 2011

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data

od Levitsky, Victor G, Kulakovskiy, Ivan V, Ershov, Nikita I, Oshchepkov, Dmitry Yu, Makeev, Vsevolod J, Hodgman, T C, Merkulova, Tatyana I
Wydane w BMC Genomics (2014)

Detection of Regulatory SNPs in Human Genome Using ChIP-seq ENCODE Data

od Bryzgalov, Leonid O., Antontseva, Elena V., Matveeva, Marina Yu., Shilov, Alexander G., Kashina, Elena V., Mordvinov, Viatcheslav A., Merkulova, Tatyana I.
Wydane 2013

rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation

od Ponomarenko, Julia V., Merkulova, Tatyana I., Orlova, Galina V., Fokin, Oleg N., Gorshkova, Elena V., Frolov, Anatoly S., Valuev, Vadim P., Ponomarenko, Mikhail P.
Wydane 2003

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations

od Ponomarenko, Julia V., Merkulova, Tatyana I., Vasiliev, Gennady V., Levashova, Zoya B., Orlova, Galina V., Lavryushev, Sergey V., Fokin, Oleg N., Ponomarenko, Mikhail P., Frolov, Anatoly S., Sarai, Akinori
Wydane 2001