NuChart: An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations

by Merelli, Ivan, Liò, Pietro, Milanesi, Luciano
Published 2013

A data integration approach for cell cycle analysis oriented to model simulation in systems biology

by Alfieri, Roberta, Merelli, Ivan, Mosca, Ettore, Milanesi, Luciano
Published 2007

The cell cycle DB: a systems biology approach to cell cycle analysis

by Alfieri, Roberta, Merelli, Ivan, Mosca, Ettore, Milanesi, Luciano
Published 2008

DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

by Chiappori, Federica, Fumian, Marco, Milanesi, Luciano, Merelli, Ivan
Published in PLoS One (2015)

A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study

by Chiappori, Federica, Mattiazzi, Luca, Milanesi, Luciano, Merelli, Ivan
Published in BMC Bioinformatics (2016)

Advantages of using graph databases to explore chromatin conformation capture experiments

by D’Agostino, Daniele, Liò, Pietro, Aldinucci, Marco, Merelli, Ivan
Published in BMC Bioinformatics (2021)

Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations

by Chiappori, Federica, Merelli, Ivan, Colombo, Giorgio, Milanesi, Luciano, Morra, Giulia
Published 2012

Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives

by Merelli, Ivan, Pérez-Sánchez, Horacio, Gesing, Sandra, D'Agostino, Daniele
Published 2014

High-Performance Computing and Big Data in Omics-Based Medicine

by Merelli, Ivan, Pérez-Sánchez, Horacio, Gesing, Sandra, D'Agostino, Daniele
Published in Biomed Res Int (2014)

An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back

by Chiappori, Federica, Merelli, Ivan, Milanesi, Luciano, Colombo, Giorgio, Morra, Giulia
Published in Sci Rep (2016)

The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer

by Tordini, Fabio, Aldinucci, Marco, Milanesi, Luciano, Liò, Pietro, Merelli, Ivan
Published in Front Genet (2016)

Integration of Multiple Resolution Data in 3D Chromatin Reconstruction Using ChromStruct

by Caudai, Claudia, Zoppè, Monica, Tonazzini, Anna, Merelli, Ivan, Salerno, Emanuele
Published in Biology (Basel) (2021)

High performance workflow implementation for protein surface characterization using grid technology

by Merelli, Ivan, Morra, Giulia, D'Agostino, Daniele, Clematis, Andrea, Milanesi, Luciano
Published 2005

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study

by Chiappori, Federica, D'Ursi, Pasqualina, Merelli, Ivan, Milanesi, Luciano, Rovida, Ermanna
Published 2009

Ontology-based, Tissue MicroArray oriented, image centered tissue bank

by Viti Federica, Merelli Ivan, Caprera Andrea, Lazzari Barbara, Stella Alessandra, Milanesi Luciano
Published 2008-04-01

Ontology-based, Tissue MicroArray oriented, image centered tissue bank

by Viti, Federica, Merelli, Ivan, Caprera, Andrea, Lazzari, Barbara, Stella, Alessandra, Milanesi, Luciano
Published 2008

A multilevel data integration resource for breast cancer study

by Mosca, Ettore, Alfieri, Roberta, Merelli, Ivan, Viti, Federica, Calabria, Andrea, Milanesi, Luciano
Published 2010

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS

by Merelli, Ivan, Calabria, Andrea, Cozzi, Paolo, Viti, Federica, Mosca, Ettore, Milanesi, Luciano
Published 2013

Integrating multi-omic features exploiting Chromosome Conformation Capture data

by Merelli, Ivan, Tordini, Fabio, Drocco, Maurizio, Aldinucci, Marco, Liò, Pietro, Milanesi, Luciano
Published in Front Genet (2015)

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections

by Merelli, Ivan, Caprera, Andrea, Stella, Alessandra, Del Corvo, Marcello, Milanesi, Luciano, Lazzari, Barbara
Published 2009