Understanding the regulatory and transcriptional complexity of the genome through structure

Por Mercer, Tim R., Mattick, John S.
Publicado em 2013

Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities

Por Dinger, Marcel E., Pang, Ken C., Mercer, Tim R., Mattick, John S.
Publicado em 2008

Specific expression of long noncoding RNAs in the mouse brain

Por Mercer, Tim R., Dinger, Marcel E., Sunkin, Susan M., Mehler, Mark F., Mattick, John S.
Publicado em 2008

Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach

Por Marcellin, Esteban, Licona-Cassani, Cuauhtemoc, Mercer, Tim R, Palfreyman, Robin W, Nielsen, Lars K
Publicado em 2013

NRED: a database of long noncoding RNA expression

Por Dinger, Marcel E., Pang, Ken C., Mercer, Tim R., Crowe, Mark L., Grimmond, Sean M., Mattick, John S.
Publicado em 2009

Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins

Por Rackham, Oliver, Shearwood, Anne-Marie J., Mercer, Tim R., Davies, Stefan M.K., Mattick, John S., Filipovska, Aleksandra
Publicado em 2011

Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

Por Gokhan Solen, Qureshi Irfan A, Mercer Tim R, Dinger Marcel E, Li Guangyu, Mattick John S, Mehler Mark F
Publicado em 2010-02-01

Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

Por Mercer, Tim R, Qureshi, Irfan A, Gokhan, Solen, Dinger, Marcel E, Li, Guangyu, Mattick, John S, Mehler, Mark F
Publicado em 2010

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

Por Mercer, Tim R, Gerhardt, Daniel J, Dinger, Marcel E, Crawford, Joanna, Trapnell, Cole, Jeddeloh, Jeffrey A, Mattick, John S, Rinn, John L
Publicado em 2011

Saccharopolyspora erythraea’s genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch

Por Marcellin, Esteban, Mercer, Tim R, Licona-Cassani, Cuauhtemoc, Palfreyman, Robin W, Dinger, Marcel E, Steen, Jennifer A, Mattick, John S, Nielsen, Lars K
Publicado em 2013

Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage

Por Bracken, Cameron P., Szubert, Jan M., Mercer, Tim R., Dinger, Marcel E., Thomson, Daniel W., Mattick, John S., Michael, Michael Z., Goodall, Gregory J.
Publicado em 2011

Improved definition of the mouse transcriptome via targeted RNA sequencing

Por Bussotti, Giovanni, Leonardi, Tommaso, Clark, Michael B., Mercer, Tim R., Crawford, Joanna, Malquori, Lorenzo, Notredame, Cedric, Dinger, Marcel E., Mattick, John S., Enright, Anton J.
Publicado no Genome Res (2016)

A variant of the KLK4 gene is expressed as a cis sense–antisense chimeric transcript in prostate cancer cells

Por Lai, John, Lehman, Melanie L., Dinger, Marcel E., Hendy, Stephen C., Mercer, Tim R., Seim, Inge, Lawrence, Mitchell G., Mattick, John S., Clements, Judith A., Nelson, Colleen C.
Publicado em 2010

Genome-wide discovery of human splicing branchpoints

Por Mercer, Tim R., Clark, Michael B., Andersen, Stacey B., Brunck, Marion E., Haerty, Wilfried, Crawford, Joanna, Taft, Ryan J., Nielsen, Lars K., Dinger, Marcel E., Mattick, John S.
Publicado no Genome Res (2015)

Expression of distinct RNAs from 3′ untranslated regions

Por Mercer, Tim R., Wilhelm, Dagmar, Dinger, Marcel E., Soldà, Giulia, Korbie, Darren J., Glazov, Evgeny A., Truong, Vy, Schwenke, Maren, Simons, Cas, Matthaei, Klaus I., Saint, Robert, Koopman, Peter, Mattick, John S.
Publicado em 2011

The human mitochondrial transcriptome

Por Mercer, Tim R., Neph, Shane, Dinger, Marcel E., Crawford, Joanna, Smith, Martin A., Shearwood, Anne-Marie J., Haugen, Eric, Bracken, Cameron P., Rackham, Oliver, Stamatoyannopoulos, John A., Filipovska, Aleksandra, Mattick, John S.
Publicado em 2011

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

Por Mercer, Tim R., Dinger, Marcel E., Bracken, Cameron P., Kolle, Gabriel, Szubert, Jan M., Korbie, Darren J., Askarian-Amiri, Marjan E., Gardiner, Brooke B., Goodall, Gregory J., Grimmond, Sean M., Mattick, John S.
Publicado em 2010

DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements

Por Mercer, Tim R, Edwards, Stacey L, Clark, Michael B, Neph, Shane J, Wang, Hao, Stergachis, Andrew B, John, Sam, Sandstrom, Richard, Li, Guoliang, Sandhu, Kuljeet S, Ruan, Yijun, Nielsen, Lars K, Mattick, John S, Stamatoyannopoulos, John A
Publicado no Nat Genet (2013)

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling

Por Rumballe Bree A, Georgas Kylie M, Krishnan Keerthana, Tang Dave, Wani Shivangi, Nourbakhsh Ehsan, Kolle Gabriel, Mercer Tim R, Gardiner Brooke B, Cloonan Nicole, Thiagarajan Rathi D, Chiu Han S, Steen Jason A, Mattick John S, Little Melissa H, Grimmond Sean M
Publicado em 2011-09-01

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling

Por Thiagarajan, Rathi D, Cloonan, Nicole, Gardiner, Brooke B, Mercer, Tim R, Kolle, Gabriel, Nourbakhsh, Ehsan, Wani, Shivangi, Tang, Dave, Krishnan, Keerthana, Georgas, Kylie M, Rumballe, Bree A, Chiu, Han S, Steen, Jason A, Mattick, John S, Little, Melissa H, Grimmond, Sean M
Publicado em 2011