Next-generation analysis of gene expression regulation – comparing the roles of synthesis and degradation

od McManus, Joel, Cheng, Zhe, Vogel, Christine
Izdano u Mol Biosyst (2015)

Isoform-level ribosome occupancy estimation guided by transcript abundance with Ribomap

od Wang, Hao, McManus, Joel, Kingsford, Carl
Izdano u Bioinformatics (2016)

Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast

od Wang, Hao, McManus, Joel, Kingsford, Carl
Izdano u J Comput Biol (2017)

Quantitative mapping of mRNA 3’ ends in Pseudomonas aeruginosa reveals a pervasive role for premature 3’ end formation in response to azithromycin

od Konikkat, Salini, Scribner, Michelle R., Eutsey, Rory, Hiller, N. Luisa, Cooper, Vaughn S., McManus, Joel
Izdano u PLoS Genet (2021)

Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data

od Spealman, Pieter, Naik, Armaghan W., May, Gemma E., Kuersten, Scott, Freeberg, Lindsay, Murphy, Robert F., McManus, Joel
Izdano u Genome Res (2018)