Breast Cancer Patient Stratification using a Molecular Regularized Consensus Clustering Method

by Wang, Chao, Machiraju, Raghu, Huang, Kun
Published 2014

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types

by Meng, Nan, Machiraju, Raghu, Huang, Kun
Published in BMC Bioinformatics (2016)

Two-Point Correlation as a Feature for Histology Images: Feature Space Structure and Correlation Updating

by Cooper, Lee, Saltz, Joel, Machiraju, Raghu, Huang, Kun
Published 2010

iGPSe: A visual analytic system for integrative genomic based cancer patient stratification

by Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Published in BMC Bioinformatics (2014)

GRAPHIE: graph based histology image explorer

by Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Published in BMC Bioinformatics (2015)

Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews

by Ji, Xiaonan, Machiraju, Raghu, Ritter, Alan, Yen, Po-Yin
Published in AMIA Annu Symp Proc (2015)

Integrative cancer patient stratification via subspace merging

by Ding, Hao, Sharpnack, Michael, Wang, Chao, Huang, Kun, Machiraju, Raghu
Published in Bioinformatics (2019)

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

by Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Published in BMC Bioinformatics (2021)

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data

by Han, Zhi, Tian, Lu, Pécot, Thierry, Huang, Tim, Machiraju, Raghu, Huang, Kun
Published 2012

State–Space Models of Mental Processes from fMRI

by Janoos, Firdaus, Singh, Shantanu, Machiraju, Raghu, Wells, William M., Mórocz, Istvan Á.
Published 2011

Predictive Modeling for Pressure Ulcers from Intensive Care Unit Electronic Health Records

by Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Published in AMIA Jt Summits Transl Sci Proc (2015)

Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks

by Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Published in BMC Med Inform Decis Mak (2017)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq

by Tang, Xing, Srivastava, Arunima, Liu, Huayang, Machiraju, Raghu, Huang, Kun, Leone, Gustavo
Published in Bioinformatics (2017)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq

by Tang, Xing, Srivastava, Arunima, Liu, Huayang, Machiraju, Raghu, Huang, Kun, Leone, Gustavo
Published in Bioinformatics (2018)

Imitating Pathologist Based Assessment With Interpretable and Context Based Neural Network Modeling of Histology Images

by Srivastava, Arunima, Kulkarni, Chaitanya, Huang, Kun, Parwani, Anil, Mallick, Parag, Machiraju, Raghu
Published in Biomed Inform Insights (2018)

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

by Eicher, Tara, Patt, Andrew, Kautto, Esko, Machiraju, Raghu, Mathé, Ewy, Zhang, Yan
Published in BMC Bioinformatics (2019)

Effectively processing medical term queries on the UMLS Metathesaurus by layered dynamic programming

by Ren, Kaiyu, Lai, Albert M, Mukhopadhyay, Aveek, Machiraju, Raghu, Huang, Kun, Xiang, Yang
Published 2014

Robust 3D Reconstruction and Identification of Dendritic Spines from Optical Microscopy Imaging

by Janoos, Firdaus, Mosaliganti, Kishore, Xu, Xiaoyin, Machiraju, Raghu, Huang, Kun, Wong, Stephen T.C.
Published 2008

Identifying survival associated morphological features of triple negative breast cancer using multiple datasets

by Wang, Chao, Pécot, Thierry, Zynger, Debra L, Machiraju, Raghu, Shapiro, Charles L, Huang, Kun
Published 2013

Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning

by Singh, Shantanu, Janoos, Firdaus, Pécot, Thierry, Caserta, Enrico, Leone, Gustavo, Rittscher, Jens, Machiraju, Raghu
Published in Inf Process Med Imaging (2011)