Breast Cancer Patient Stratification using a Molecular Regularized Consensus Clustering Method

von Wang, Chao, Machiraju, Raghu, Huang, Kun
Veröffentlicht 2014

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types

von Meng, Nan, Machiraju, Raghu, Huang, Kun
Veröffentlicht in BMC Bioinformatics (2016)

Two-Point Correlation as a Feature for Histology Images: Feature Space Structure and Correlation Updating

von Cooper, Lee, Saltz, Joel, Machiraju, Raghu, Huang, Kun
Veröffentlicht 2010

iGPSe: A visual analytic system for integrative genomic based cancer patient stratification

von Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Veröffentlicht in BMC Bioinformatics (2014)

GRAPHIE: graph based histology image explorer

von Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Veröffentlicht in BMC Bioinformatics (2015)

Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews

von Ji, Xiaonan, Machiraju, Raghu, Ritter, Alan, Yen, Po-Yin
Veröffentlicht in AMIA Annu Symp Proc (2015)

Integrative cancer patient stratification via subspace merging

von Ding, Hao, Sharpnack, Michael, Wang, Chao, Huang, Kun, Machiraju, Raghu
Veröffentlicht in Bioinformatics (2019)

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

von Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Veröffentlicht in BMC Bioinformatics (2021)

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data

von Han, Zhi, Tian, Lu, Pécot, Thierry, Huang, Tim, Machiraju, Raghu, Huang, Kun
Veröffentlicht 2012

State–Space Models of Mental Processes from fMRI

von Janoos, Firdaus, Singh, Shantanu, Machiraju, Raghu, Wells, William M., Mórocz, Istvan Á.
Veröffentlicht 2011

Predictive Modeling for Pressure Ulcers from Intensive Care Unit Electronic Health Records

von Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Veröffentlicht in AMIA Jt Summits Transl Sci Proc (2015)

Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks

von Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Veröffentlicht in BMC Med Inform Decis Mak (2017)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq

von Tang, Xing, Srivastava, Arunima, Liu, Huayang, Machiraju, Raghu, Huang, Kun, Leone, Gustavo
Veröffentlicht in Bioinformatics (2017)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq

von Tang, Xing, Srivastava, Arunima, Liu, Huayang, Machiraju, Raghu, Huang, Kun, Leone, Gustavo
Veröffentlicht in Bioinformatics (2018)

Imitating Pathologist Based Assessment With Interpretable and Context Based Neural Network Modeling of Histology Images

von Srivastava, Arunima, Kulkarni, Chaitanya, Huang, Kun, Parwani, Anil, Mallick, Parag, Machiraju, Raghu
Veröffentlicht in Biomed Inform Insights (2018)

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

von Eicher, Tara, Patt, Andrew, Kautto, Esko, Machiraju, Raghu, Mathé, Ewy, Zhang, Yan
Veröffentlicht in BMC Bioinformatics (2019)

Effectively processing medical term queries on the UMLS Metathesaurus by layered dynamic programming

von Ren, Kaiyu, Lai, Albert M, Mukhopadhyay, Aveek, Machiraju, Raghu, Huang, Kun, Xiang, Yang
Veröffentlicht 2014

Robust 3D Reconstruction and Identification of Dendritic Spines from Optical Microscopy Imaging

von Janoos, Firdaus, Mosaliganti, Kishore, Xu, Xiaoyin, Machiraju, Raghu, Huang, Kun, Wong, Stephen T.C.
Veröffentlicht 2008

Identifying survival associated morphological features of triple negative breast cancer using multiple datasets

von Wang, Chao, Pécot, Thierry, Zynger, Debra L, Machiraju, Raghu, Shapiro, Charles L, Huang, Kun
Veröffentlicht 2013

Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning

von Singh, Shantanu, Janoos, Firdaus, Pécot, Thierry, Caserta, Enrico, Leone, Gustavo, Rittscher, Jens, Machiraju, Raghu
Veröffentlicht in Inf Process Med Imaging (2011)