Breast Cancer Patient Stratification using a Molecular Regularized Consensus Clustering Method

Autor Wang, Chao, Machiraju, Raghu, Huang, Kun
Vydáno 2014

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types

Autor Meng, Nan, Machiraju, Raghu, Huang, Kun
Vydáno v BMC Bioinformatics (2016)

Two-Point Correlation as a Feature for Histology Images: Feature Space Structure and Correlation Updating

Autor Cooper, Lee, Saltz, Joel, Machiraju, Raghu, Huang, Kun
Vydáno 2010

iGPSe: A visual analytic system for integrative genomic based cancer patient stratification

Autor Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Vydáno v BMC Bioinformatics (2014)

GRAPHIE: graph based histology image explorer

Autor Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Vydáno v BMC Bioinformatics (2015)

Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews

Autor Ji, Xiaonan, Machiraju, Raghu, Ritter, Alan, Yen, Po-Yin
Vydáno v AMIA Annu Symp Proc (2015)

Integrative cancer patient stratification via subspace merging

Autor Ding, Hao, Sharpnack, Michael, Wang, Chao, Huang, Kun, Machiraju, Raghu
Vydáno v Bioinformatics (2019)

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

Autor Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Vydáno v BMC Bioinformatics (2021)

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data

Autor Han, Zhi, Tian, Lu, Pécot, Thierry, Huang, Tim, Machiraju, Raghu, Huang, Kun
Vydáno 2012

State–Space Models of Mental Processes from fMRI

Autor Janoos, Firdaus, Singh, Shantanu, Machiraju, Raghu, Wells, William M., Mórocz, Istvan Á.
Vydáno 2011

Predictive Modeling for Pressure Ulcers from Intensive Care Unit Electronic Health Records

Autor Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Vydáno v AMIA Jt Summits Transl Sci Proc (2015)

Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks

Autor Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Vydáno v BMC Med Inform Decis Mak (2017)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq

Autor Tang, Xing, Srivastava, Arunima, Liu, Huayang, Machiraju, Raghu, Huang, Kun, Leone, Gustavo
Vydáno v Bioinformatics (2017)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq

Autor Tang, Xing, Srivastava, Arunima, Liu, Huayang, Machiraju, Raghu, Huang, Kun, Leone, Gustavo
Vydáno v Bioinformatics (2018)

Imitating Pathologist Based Assessment With Interpretable and Context Based Neural Network Modeling of Histology Images

Autor Srivastava, Arunima, Kulkarni, Chaitanya, Huang, Kun, Parwani, Anil, Mallick, Parag, Machiraju, Raghu
Vydáno v Biomed Inform Insights (2018)

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

Autor Eicher, Tara, Patt, Andrew, Kautto, Esko, Machiraju, Raghu, Mathé, Ewy, Zhang, Yan
Vydáno v BMC Bioinformatics (2019)

Effectively processing medical term queries on the UMLS Metathesaurus by layered dynamic programming

Autor Ren, Kaiyu, Lai, Albert M, Mukhopadhyay, Aveek, Machiraju, Raghu, Huang, Kun, Xiang, Yang
Vydáno 2014

Robust 3D Reconstruction and Identification of Dendritic Spines from Optical Microscopy Imaging

Autor Janoos, Firdaus, Mosaliganti, Kishore, Xu, Xiaoyin, Machiraju, Raghu, Huang, Kun, Wong, Stephen T.C.
Vydáno 2008

Identifying survival associated morphological features of triple negative breast cancer using multiple datasets

Autor Wang, Chao, Pécot, Thierry, Zynger, Debra L, Machiraju, Raghu, Shapiro, Charles L, Huang, Kun
Vydáno 2013

Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning

Autor Singh, Shantanu, Janoos, Firdaus, Pécot, Thierry, Caserta, Enrico, Leone, Gustavo, Rittscher, Jens, Machiraju, Raghu
Vydáno v Inf Process Med Imaging (2011)