Genome-Wide Search for Host Association Factors during Ovine Progressive Pneumonia Virus Infection

by Thompson, Jesse, Ma, Fangrui, Quinn, Meghan, Xiang, Shi-Hua
Published in PLoS One (2016)

Distinct transcriptome profiles of Gag-specific CD8+ T cells temporally correlated with the protection elicited by SIVΔnef live attenuated vaccine

by Lu, Wuxun, Wan, Yanmin, Ma, Fangrui, Johnson, R. Paul, Li, Qingsheng
Published in PLoS One (2017)

Small Interfering RNA–Mediated Translation Repression Alters Ribosome Sensitivity to Inhibition by Cycloheximide in Chlamydomonas reinhardtii([W])

by Ma, Xinrong, Kim, Eun-Jeong, Kook, Insun, Ma, Fangrui, Voshall, Adam, Moriyama, Etsuko, Cerutti, Heriberto
Published 2013

Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes

by Seitzer, Phillip, Jeanniard, Adrien, Ma, Fangrui, Van Etten, James L., Facciotti, Marc T., Dunigan, David D.
Published in Viruses (2018)

Characterization of Founder Viruses in Very Early SIV Rectal Transmission

by Yuan, Zhe, Ma, Fangrui, Demers, Andrew J., Wang, Dong, Xu, Jianqing, Lewis, Mark G., Li, Qingsheng
Published in Virology (2016)

Expression of BrpA in Streptococcus mutans Is Regulated By FNR-box Mediated Repression

by Liao, Sumei, De, Arpan, Bitoun, Jacob P., Chapman, Lynne, Yao, Xin, Yu, Qingzhao, Ma, Fangrui, Wen, Zezhang T.
Published in Mol Oral Microbiol (2017)

Recapitulating Cross-Species Transmission of Simian Immunodeficiency Virus SIVcpz to Humans by Using Humanized BLT Mice

by Yuan, Zhe, Kang, Guobin, Ma, Fangrui, Lu, Wuxun, Fan, Wenjin, Fennessey, Christine M., Keele, Brandon F., Li, Qingsheng
Published in J Virol (2016)

Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery

by Nissimov, Jozef I., Pagarete, António, Ma, Fangrui, Cody, Sean, Dunigan, David D., Kimmance, Susan A., Allen, Michael J.
Published in Viruses (2017)

A Synthetic Porcine Reproductive and Respiratory Syndrome Virus Strain Confers Unprecedented Levels of Heterologous Protection

by Vu, Hiep L. X., Ma, Fangrui, Laegreid, William W., Pattnaik, Asit K., Steffen, David, Doster, Alan R., Osorio, Fernando A.
Published in J Virol (2015)

Next-Generation mRNA Sequencing Reveals Pyroptosis-Induced CD4(+) T Cell Death in Early Simian Immunodeficiency Virus-Infected Lymphoid Tissues

by Lu, Wuxun, Demers, Andrew J., Ma, Fangrui, Kang, Guobin, Yuan, Zhe, Wan, Yanmin, Li, Yue, Xu, Jianqing, Lewis, Mark, Li, Qingsheng
Published in J Virol (2015)

Virus-Host Mucosal Interactions During Early SIV Rectal Transmission

by Lu, Wuxun, Ma, Fangrui, Churbanov, Alexander, Wan, Yanmin, Li, Yue, Kang, Guobin, Yuan, Zhe, Wang, Dong, Zhang, Chi, Xu, Jianqing, Lewis, Mark, Li, Qingsheng
Published in Virology (2014)

Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice

by Leamy, Larry J, Kelly, Scott A, Nietfeldt, Joseph, Legge, Ryan M, Ma, Fangrui, Hua, Kunjie, Sinha, Rohita, Peterson, Daniel A, Walter, Jens, Benson, Andrew K, Pomp, Daniel
Published in Genome Biol (2014)

Characterization of a New Chlorovirus Type with Permissive and Non-permissive Features on Phylogenetically Related Algal Strains

by Quispe, Cristian F., Esmael, Ahmed, Sonderman, Olivia, McQuinn, Michelle, Agarkova, Irina, Battah, Mohammed, Duncan, Garry A., Dunigan, David D., Smith, Timothy P.L., DeCastro, Cristina, Speciale, Immacolata, Ma, Fangrui, Van Etten, James L.
Published in Virology (2016)

Bile-acid-mediated decrease in endoplasmic reticulum stress: a potential contributor to the metabolic benefits of ileal interposition surgery in UCD-T2DM rats

by Cummings, Bethany P., Bettaieb, Ahmed, Graham, James L., Kim, Jaehyoung, Ma, Fangrui, Shibata, Noreene, Stanhope, Kimber L., Giulivi, Cecilia, Hansen, Frederik, Jelsing, Jacob, Vrang, Niels, Kowala, Mark, Chouinard, Michael L., Haj, Fawaz G., Havel, Peter J.
Published 2013

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

by Benson, Andrew K., Kelly, Scott A., Legge, Ryan, Ma, Fangrui, Low, Soo Jen, Kim, Jaehyoung, Zhang, Min, Oh, Phaik Lyn, Nehrenberg, Derrick, Hua, Kunjie, Kachman, Stephen D., Moriyama, Etsuko N., Walter, Jens, Peterson, Daniel A., Pomp, Daniel
Published 2010

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice

by Yolken, Robert H., Jones-Brando, Lorraine, Dunigan, David D., Kannan, Geetha, Dickerson, Faith, Severance, Emily, Sabunciyan, Sarven, Talbot, C. Conover, Prandovszky, Emese, Gurnon, James R., Agarkova, Irina V., Leister, Flora, Gressitt, Kristin L., Chen, Ou, Deuber, Bryan, Ma, Fangrui, Pletnikov, Mikhail V., Van Etten, James L.
Published in Proc Natl Acad Sci U S A (2014)

Reply to Kjartansdóttir et al.: Chlorovirus ATCV-1 findings not explained by contamination

by Yolken, Robert H., Jones-Brando, Lorraine, Dunigan, David D., Kannan, Geetha, Dickerson, Faith, Severance, Emily, Sabunciyan, Sarven, Talbot, C. Conover, Prandovszky, Emese, Gurnon, James R., Agarkova, Irina V., Leister, Flora, Gressitt, Kristin L., Chen, Ou, Deuber, Bryan, Ma, Fangrui, Pletnikov, Mikhail V., Van Etten, James L.
Published in Proc Natl Acad Sci U S A (2015)

Paramecium bursaria Chlorella Virus 1 Proteome Reveals Novel Architectural and Regulatory Features of a Giant Virus

by Dunigan, David D., Cerny, Ronald L., Bauman, Andrew T., Roach, Jared C., Lane, Leslie C., Agarkova, Irina V., Wulser, Kurt, Yanai-Balser, Giane M., Gurnon, James R., Vitek, Jason C., Kronschnabel, Bernard J., Jeanniard, Adrien, Blanc, Guillaume, Upton, Chris, Duncan, Garry A., McClung, O. William, Ma, Fangrui, Van Etten, James L.
Published 2012