Novel metrics for evaluating the functional coherence of protein groups via protein semantic network

Por Zheng, Bin, Lu, Xinghua
Publicado em 2007

Identifying informative subsets of the Gene Ontology with information bottleneck methods

Por Jin, Bo, Lu, Xinghua
Publicado em 2010

Integrating Genome and Functional Genomics Data to Reveal Perturbed Signaling Pathways in Ovarian Cancers

Por Lu, Songjian, Lu, Xinghua
Publicado em 2012

Using graph models to find transcription factor modules: the hitting set problem and an exact algorithm

Por Lu, Songjian, Lu, Xinghua
Publicado em 2013

Conceptualization of molecular findings by mining gene annotations

Por Chen, Vicky, Lu, Xinghua
Publicado em 2013

Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling

Por Chen, Vicky, Paisley, John, Lu, Xinghua
Publicado no BMC Genomics (2017)

Physical mobilization of secretory vesicles facilitates neuropeptide release by nerve growth factor-differentiated PC12 Cells

Por Ng, Yuen-Keng, Lu, Xinghua, Levitan, Edwin S
Publicado em 2002

Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma

Por Young, Jonathan D., Cai, Chunhui, Lu, Xinghua
Publicado no BMC Bioinformatics (2017)

Identifying biological concepts from a protein-related corpus with a probabilistic topic model

Por Zheng, Bin, McLean, David C, Lu, Xinghua
Publicado em 2006

Multi-label literature classification based on the Gene Ontology graph

Por Jin, Bo, Muller, Brian, Zhai, Chengxiang, Lu, Xinghua
Publicado em 2008

Mapping annotations with textual evidence using an scLDA model

Por Jin, Bo, Chen, Vicky, Chen, Lujia, Lu, Xinghua
Publicado em 2011

Translational Biomedical Informatics and Computational Systems Medicine

Por Zhao, Zhongming, Shen, Bairong, Lu, Xinghua, Vongsangnak, Wanwipa
Publicado em 2013

Modeling Signal Transduction from Protein Phosphorylation to Gene Expression

Por Cai, Chunhui, Chen, Lujia, Jiang, Xia, Lu, Xinghua
Publicado em 2014

Trans-species learning of cellular signaling systems with bimodal deep belief networks

Por Chen, Lujia, Cai, Chunhui, Chen, Vicky, Lu, Xinghua
Publicado no Bioinformatics (2015)

An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem

Por Lu, Songjian, Mandava, Gunasheil, Yan, Gaibo, Lu, Xinghua
Publicado no Algorithms Mol Biol (2016)

Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model

Por Chen, Lujia, Cai, Chunhui, Chen, Vicky, Lu, Xinghua
Publicado no BMC Bioinformatics (2016)

A signal-based method for finding driver modules of breast cancer metastasis to the lung

Por Yan, Gaibo, Chen, Vicky, Lu, Xinghua, Lu, Songjian
Publicado no Sci Rep (2017)

Automatic annotation of protein motif function with Gene Ontology terms

Por Gopalakrishnan Vanathi, Zhai Chengxiang, Lu Xinghua, Buchanan Bruce G
Publicado em 2004-09-01

GOGrapher: A Python library for GO graph representation and analysis

Por Lu Xinghua, Jin Bo, Richards Adam J, Muller Brian
Publicado em 2009-07-01

Automatic annotation of protein motif function with Gene Ontology terms

Por Lu, Xinghua, Zhai, Chengxiang, Gopalakrishnan, Vanathi, Buchanan, Bruce G
Publicado em 2004