Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer Sets

by Cai, Lin, Ye, Lin, Tong, Amy Hin Yan, Lok, Si, Zhang, Tong
Published 2013

Ammonia-oxidizing archaea and ammonia-oxidizing bacteria in six full-scale wastewater treatment bioreactors

by Zhang, Tong, Ye, Lin, Tong, Amy Hin Yan, Shao, Ming-Fei, Lok, Si
Published 2011

Genomic Sequencing and Comparative Analysis of Epstein-Barr Virus Genome Isolated from Primary Nasopharyngeal Carcinoma Biopsy

by Kwok, Hin, Tong, Amy H. Y., Lin, Chi Ho, Lok, Si, Farrell, Paul J., Kwong, Dora L. W., Chiang, Alan K. S.
Published 2012

Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

by Zhang, Na, Bao, Yun-Juan, Tong, Amy Hin-Yan, Zuyderduyn, Scott, Bader, Gary D., Malik Peiris, J. S., Lok, Si, Lee, Suki Man-Yan
Published in BMC Med Genomics (2018)

Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

by Lau, Susanna K. P., Chow, Wang-Ngai, Wong, Annette Y. P., Yeung, Julian M. Y., Bao, Jessie, Zhang, Na, Lok, Si, Woo, Patrick C. Y., Yuen, Kwok-Yung
Published 2013

Mutations Enabling Displacement of Tryptophan by 4-Fluorotryptophan as a Canonical Amino Acid of the Genetic Code

by Yu, Allen Chi-Shing, Yim, Aldrin Kay-Yuen, Mat, Wai-Kin, Tong, Amy Hin-Yan, Lok, Si, Xue, Hong, Tsui, Stephen Kwok-Wing, Wong, J. Tze-Fei, Chan, Ting-Fung
Published 2014

Complete Sequencing of pNDM-HK Encoding NDM-1 Carbapenemase from a Multidrug-Resistant Escherichia coli Strain Isolated in Hong Kong

by Ho, Pak Leung, Lo, Wai U., Yeung, Man Kiu, Lin, Chi Ho, Chow, Kin Hung, Ang, Irene, Tong, Amy Hin Yan, Bao, Jessie Yun-Juan, Lok, Si, Lo, Janice Yee Chi
Published 2011

Identification and Expression Profiling of MicroRNAs in the Brain, Liver and Gonads of Marine Medaka (Oryzias melastigma) and in Response to Hypoxia

by Lau, Karen, Lai, Keng Po, Bao, Jessie Yun Juan, Zhang, Na, Tse, Anna, Tong, Amy, Li, Jing Woei, Lok, Si, Kong, Richard Yuen Chong, Lui, Wing Yee, Wong, Alice, Wu, Rudolf Shiu Sun
Published 2014

Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes

by Lai, Keng Po, Li, Jing-Woei, Wang, Simon Yuan, Chiu, Jill Man-Ying, Tse, Anna, Lau, Karen, Lok, Si, Au, Doris Wai-Ting, Tse, William Ka-Fai, Wong, Chris Kong-Chu, Chan, Ting-Fung, Kong, Richard Yuen-Chong, Wu, Rudolf Shiu-Sun
Published in BMC Genomics (2015)

Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes

by Li, Jing-Woei, Lee, Heung-Man, Wang, Ying, Tong, Amy Hin-Yan, Yip, Kevin Y., Tsui, Stephen Kwok-Wing, Lok, Si, Ozaki, Risa, Luk, Andrea O, Kong, Alice P. S., So, Wing-Yee, Ma, Ronald C. W., Chan, Juliana C. N., Chan, Ting-Fung
Published in Sci Rep (2016)

A Comprehensive Workflow for Read Depth-Based Identification of Copy-Number Variation from Whole-Genome Sequence Data

by Trost, Brett, Walker, Susan, Wang, Zhuozhi, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R., Sung, Wilson W.L., Pereira, Sergio L., Whitney, Joe, Chan, Ada J.S., Pellecchia, Giovanna, Reuter, Miriam S., Lok, Si, Yuen, Ryan K.C., Marshall, Christian R., Merico, Daniele, Scherer, Stephen W.
Published in Am J Hum Genet (2018)

Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation

by Lou, Shaoke, Lee, Heung-Man, Qin, Hao, Li, Jing-Woei, Gao, Zhibo, Liu, Xin, Chan, Landon L, KL Lam, Vincent, So, Wing-Yee, Wang, Ying, Lok, Si, Wang, Jun, Ma, Ronald CW, Tsui, Stephen Kwok-Wing, Chan, Juliana CN, Chan, Ting-Fung, Yip, Kevin Y
Published 2014

The Complete Genome and Proteome of Laribacter hongkongensis Reveal Potential Mechanisms for Adaptations to Different Temperatures and Habitats

by Woo, Patrick C. Y., Lau, Susanna K. P., Tse, Herman, Teng, Jade L. L., Curreem, Shirly O. T., Tsang, Alan K. L., Fan, Rachel Y. Y., Wong, Gilman K. M., Huang, Yi, Loman, Nicholas J., Snyder, Lori A. S., Cai, James J., Huang, Jian-Dong, Mak, William, Pallen, Mark J., Lok, Si, Yuen, Kwok-Yung
Published 2009

Recoding RNA editing of antizyme inhibitor 1 predisposes to hepatocellular carcinoma

by Chen, Leilei, Li, Yan, Lin, Chi Ho, Chan, Tim Hon Man, Chow, Raymond Kwok Kei, Song, Yangyang, Liu, Ming, Yuan, Yun-Fei, Fu, Li, Kong, Kar Lok, Qi, Lihua, Li, Yan, Zhang, Na, Tong, Amy Hin Yan, Kwong, Dora Lai-Wan, Man, Kwan, Lo, Chung Mau, Lok, Si, Tenen, Daniel G., Guan, Xin-Yuan
Published 2013

Molecular Characterization of the 2011 Hong Kong Scarlet Fever Outbreak

by Tse, Herman, Bao, Jessie Y. J., Davies, Mark R., Maamary, Peter, Tsoi, Hoi-Wah, Tong, Amy H. Y., Ho, Tom C. C., Lin, Chi-Ho, Gillen, Christine M., Barnett, Timothy C., Chen, Jonathan H. K., Lee, Mianne, Yam, Wing-Cheong, Wong, Chi-Kin, Ong, Cheryl-lynn Y., Chan, Yee-Wai, Wu, Cheng-Wei, Ng, Tony, Lim, Wilina W. L., Tsang, Thomas H. F., Tse, Cindy W. S., Dougan, Gordon, Walker, Mark J., Lok, Si, Yuen, Kwok-Yung
Published 2012

De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis)

by Lok, Si, Paton, Tara A., Wang, Zhuozhi, Kaur, Gaganjot, Walker, Susan, Yuen, Ryan K. C., Sung, Wilson W. L., Whitney, Joseph, Buchanan, Janet A., Trost, Brett, Singh, Naina, Apresto, Beverly, Chen, Nan, Coole, Matthew, Dawson, Travis J., Ho, Karen, Hu, Zhizhou, Pullenayegum, Sanjeev, Samler, Kozue, Shipstone, Arun, Tsoi, Fiona, Wang, Ting, Pereira, Sergio L., Rostami, Pirooz, Ryan, Carol Ann, Tong, Amy Hin Yan, Ng, Karen, Sundaravadanam, Yogi, Simpson, Jared T., Lim, Burton K., Engstrom, Mark D., Dutton, Christopher J., Kerr, Kevin C. R., Franke, Maria, Rapley, William, Wintle, Richard F., Scherer, Stephen W.
Published in G3 (Bethesda) (2017)

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

by Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Mbandi, Stanley Kimbung, Jonas, Mario, Hin Yan Tong, Amy, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell, Moxon, Simon, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Kumar Katneni, Vinaya, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamás, Turner, Stephen W., Lok, Si, Christoffels, Alan, Orbán, László
Published in PLoS Genet (2016)

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

by Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Mbandi, Stanley Kimbung, Jonas, Mario, Hin Yan Tong, Amy, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell, Moxon, Simon, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Katneni, Vinaya Kumar, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamás, Turner, Stephen W., Lok, Si, Christoffels, Alan, Orbán, László
Published in PLoS Genet (2016)