Local Network Topology in Human Protein Interaction Data Predicts Functional Association

Por Li, Hua, Liang, Shoudan
Publicado em 2009

Predicting protein functions from redundancies in large-scale protein interaction networks

Por Samanta, Manoj Pratim, Liang, Shoudan
Publicado em 2003

Cell Cycle Dependent Nucleosome Occupancy At Cohesin Binding Sites In Yeast Chromosomes

Por Liu, Jie, Czajkowsky, Daniel M., Liang, Shoudan, Shao, Zhifeng
Publicado em 2008

On Differential Gene Expression Using RNA-Seq Data

Por Lee, Juhee, Ji, Yuan, Liang, Shoudan, Cai, Guoshuai, Müller, Peter
Publicado em 2011

Towards Breaking the Histone Code – Bayesian Graphical Models for Histone Modifications

Por Mitra, Riten, Müller, Peter, Liang, Shoudan, Xu, Yanxun, Ji, Yuan
Publicado em 2013

Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data

Por Lee, Juhee, Ji, Yuan, Liang, Shoudan, Cai, Guoshuai, Müller, Peter
Publicado no Stat Biosci (2013)

fREDUCE: Detection of degenerate regulatory elements using correlation with expression

Por Wu, Randy Z, Chaivorapol, Christina, Zheng, Jiashun, Li, Hao, Liang, Shoudan
Publicado em 2007

Intragenomic Evolution of a Transcriptional Enhancer in the Genome of Strongylocentrotus purpuratus

Por Kiyama, Takae, Zhang, Jiexin, Liang, Shoudan, Liang, Shuguang, Klein, William H.
Publicado em 2009

The Postnatal Role of Sox9 in Cartilage

Por Henry, Stephen P., Liang, Shoudan, Akdemir, Kadir C, de Crombrugghe, Benoit
Publicado em 2012

TDRD3 is an Effector Molecule for Arginine Methylated Histone Marks

Por Yang, Yanzhong, Lu, Yue, Espejo, Alexsandra, Wu, Jiacai, Xu, Wei, Liang, Shoudan, Bedford, Mark T.
Publicado em 2010

Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data

Por Xu, Yanxun, Lee, Juhee, Yuan, Yuan, Mitra, Riten, Liang, Shoudan, Müller, Peter, Ji, Yuan
Publicado no Bayesian Anal (2013)

Dynamic Status of REST in the Mouse ESC Pluripotency Network

Por Singh, Sanjay K., Veo, Bethany L., Kagalwala, Mohamedi N., Shi, Weiwei, Liang, Shoudan, Majumder, Sadhan
Publicado em 2012

dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes

Por Li, Hua, Su, Xiao, Gallegos, Juan, Lu, Yue, Ji, Yuan, Molldrem, Jeffrey J, Liang, Shoudan
Publicado em 2012

Cyclic neutropenia associated with T cell immunity to granulocyte proteases and a double de novo mutation in GFI1, a transcriptional regulator of ELA2

Por Armistead, Paul M., Wieder, Eric, Akande, Olanike, Alatrash, Gheath, Quintanilla, Kathryn, Liang, Shoudan, Molldrem, Jeffrey
Publicado em 2010

PAND: A Distribution to Identify Functional Linkage from Networks with Preferential Attachment Property

Por Li, Hua, Tong, Pan, Gallegos, Juan, Dimmer, Emily, Cai, Guoshuai, Molldrem, Jeffrey J., Liang, Shoudan
Publicado no PLoS One (2015)

Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments

Por Chung, Woonbok, Bondaruk, Jolanta, Jelinek, Jaroslav, Lotan, Yair, Liang, Shoudan, Czerniak, Bogdan, Issa, Jean-Pierre J.
Publicado em 2011

SINE Retrotransposons Cause Epigenetic Reprogramming of Adjacent Gene Promoters

Por Estécio, Marcos R.H., Gallegos, Juan, Dekmezian, Mhair, Lu, Yue, Liang, Shoudan, Issa, Jean-Pierre J.
Publicado em 2012

BM-BC: a Bayesian method of base calling for Solexa sequence data

Por Ji, Yuan, Mitra, Riten, Quintana, Fernando, Jara, Alejandro, Mueller, Peter, Liu, Ping, Lu, Yue, Liang, Shoudan
Publicado em 2012

Accuracy of RNA-Seq and its dependence on sequencing depth

Por Cai, Guoshuai, Li, Hua, Lu, Yue, Huang, Xuelin, Lee, Juhee, Müller, Peter, Ji, Yuan, Liang, Shoudan
Publicado em 2012

A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data

Por Xu, Yanxun, Zheng, Xiaofeng, Yuan, Yuan, Estecio, Marcos R, Issa, Jean-Pierre, Ji, Yuan, Liang, Shoudan
Publicado no IEEE Int Workshop Genomic Signal Process Stat (2012)