MIsoMine: a genome-scale high-resolution data portal of expression, function and networks at the splice isoform level in the mouse

por Li, Hong-Dong, Omenn, Gilbert S., Guan, Yuanfang
Publicado en Database (Oxford) (2015)

A proteogenomic approach to understand splice isoform functions through sequence and expression-based computational modeling

por Li, Hong-Dong, Omenn, Gilbert S., Guan, Yuanfang
Publicado en Brief Bioinform (2016)

The Emerging Era of Genomic Data Integration for Analyzing Splice Isoform Function

por Li, Hong-Dong, Menon, Rajasree, Omenn, Gilbert S., Guan, Yuanfang
Publicado 2014

Revisiting the Identification of Canonical Splice Isoforms through Integration of Functional Genomics and Proteomics Evidence

por Li, Hong-Dong, Menon, Rajasree, Omenn, Gilbert S., Guan, Yuanfang
Publicado en Proteomics (2014)

iREAD: a tool for intron retention detection from RNA-seq data

por Li, Hong-Dong, Funk, Cory C., Price, Nathan D.
Publicado en BMC Genomics (2020)

Sc-GPE: A Graph Partitioning-Based Cluster Ensemble Method for Single-Cell

por Zhu, Xiaoshu, Li, Jian, Li, Hong-Dong, Xie, Miao, Wang, Jianxin
Publicado en Front Genet (2020)

Intron Retention as a Mode for RNA-Seq Data Analysis

por Zheng, Jian-Tao, Lin, Cui-Xiang, Fang, Zhao-Yu, Li, Hong-Dong
Publicado en Front Genet (2020)

A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads

por Zhang, Wenjing, Huang, Neng, Zheng, Jiantao, Liao, Xingyu, Wang, Jianxin, Li, Hong-Dong
Publicado en Genes (Basel) (2019)

Brain-specific functional relationship networks inform autism spectrum disorder gene prediction

por Duda, Marlena, Zhang, Hongjiu, Li, Hong-Dong, Wall, Dennis P., Burmeister, Margit, Guan, Yuanfang
Publicado en Transl Psychiatry (2018)

Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data

por Eksi, Ridvan, Li, Hong-Dong, Menon, Rajasree, Wen, Yuchen, Omenn, Gilbert S., Kretzler, Matthias, Guan, Yuanfang
Publicado 2013

A Network of Splice Isoforms for the Mouse

por Li, Hong-Dong, Menon, Rajasree, Eksi, Ridvan, Guerler, Aysam, Zhang, Yang, Omenn, Gilbert S., Guan, Yuanfang
Publicado en Sci Rep (2016)

Functional Networks of Highest-Connected Splice Isoforms: From The Chromosome 17 Human Proteome Project

por Li, Hong-Dong, Menon, Rajasree, Govindarajoo, Brandon, Panwar, Bharat, Zhang, Yang, Omenn, Gilbert S., Guan, Yuanfang
Publicado en J Proteome Res (2015)

A Hybrid Clustering Algorithm for Identifying Cell Types from Single-Cell RNA-Seq Data

por Zhu, Xiaoshu, Li, Hong-Dong, Xu, Yunpei, Guo, Lilu, Wu, Fang-Xiang, Duan, Guihua, Wang, Jianxin
Publicado en Genes (Basel) (2019)

IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation

por Li, Hong-Dong, Yang, Changhuo, Zhang, Zhimin, Yang, Mengyun, Wu, Fang-Xiang, Omenn, Gilbert S, Wang, Jianxin
Publicado en Bioinformatics (2020)

Identification of stage-specific genes associated with lupus nephritis and response to remission induction in NZB/W and NZM2410 mice

por Bethunaickan, Ramalingam, Berthier, Celine C, Zhang, Weijia, Eksi, Ridvan, Li, Hong-Dong, Guan, Yuanfang, Kretzler, Matthias, Davidson, Anne
Publicado 2014

Identification of stage specific genes associated with lupus nephritis and response to remission induction in NZB/W and NZM2410 mice

por Bethunaickan, Ramalingam, Berthier, Celine C., Zhang, Weijia, Eksi, Ridvan, Li, Hong-Dong, Guan, Yuanfang, Kretzler, Matthias, Davidson, Anne
Publicado en Arthritis Rheumatol (2014)

Prenatal and postnatal antibiotic exposure influences the gut microbiota of preterm infants in neonatal intensive care units

por Zou, Zhi-Hui, Liu, Dong, Li, Hong-Dong, Zhu, Dan-Ping, He, Yu, Hou, Ting, Yu, Jia-Lin
Publicado en Ann Clin Microbiol Antimicrob (2018)

An interpretable boosting model to predict side effects of analgesics for osteoarthritis

por Liu, Liangliang, Yu, Ying, Fei, Zhihui, Li, Min, Wu, Fang-Xiang, Li, Hong-Dong, Pan, Yi, Wang, Jianxin
Publicado en BMC Syst Biol (2018)

Trim33 is required for appropriate development of pre-cardiogenic mesoderm

por Rajderkar, Sudha, Mann, Jeffrey M., Panaretos, Christopher, Yumoto, Kenji, Li, Hong-Dong, Mishina, Yuji, Ralston, Benjamin, Kaartinen, Vesa
Publicado en Dev Biol (2019)

Genetic variants in PLG, LPA, and SIGLEC 14 as well as smoking contribute to plasma plasminogen levels

por Ma, Qianyi, Ozel, Ayse B., Ramdas, Shweta, McGee, Beth, Khoriaty, Rami, Siemieniak, David, Li, Hong-Dong, Guan, Yuanfang, Brody, Lawrence C., Mills, James L., Molloy, Anne M., Ginsburg, David, Li, Jun Z., Desch, Karl C.
Publicado en Blood (2014)