Alvis: a tool for contig and read ALignment VISualisation and chimera detection

od Martin, Samuel, Leggett, Richard M.
Wydane w BMC Bioinformatics (2021)

Reference-free SNP detection: dealing with the data deluge

od Leggett, Richard M, MacLean, Dan
Wydane 2014

New approaches for metagenome assembly with short reads

od Ayling, Martin, Clark, Matthew D, Leggett, Richard M
Wydane w Brief Bioinform (2019)

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

od Leggett, Richard M., Clavijo, Bernardo J., Clissold, Leah, Clark, Matthew D., Caccamo, Mario
Wydane 2014

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles

od Leggett, Richard M., Heavens, Darren, Caccamo, Mario, Clark, Matthew D., Davey, Robert P.
Wydane w Bioinformatics (2016)

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

od Gihawi, Abraham, Rallapalli, Ghanasyam, Hurst, Rachel, Cooper, Colin S., Leggett, Richard M., Brewer, Daniel S.
Wydane w Genome Biol (2019)

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

od Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Clavijo, Bernardo J., Waite, Darren, Davey, Robert P.
Wydane 2013

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics

od Ramirez-Gonzalez, Ricardo H., Leggett, Richard M., Waite, Darren, Thanki, Anil, Drou, Nizar, Caccamo, Mario, Davey, Robert
Wydane 2014

Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs

od Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Verweij, Walter, Kawashima, Cintia G., Iqbal, Zamin, Jones, Jonathan D. G., Caccamo, Mario, MacLean, Daniel
Wydane 2013

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

od Daly, Gordon M., Leggett, Richard M., Rowe, William, Stubbs, Samuel, Wilkinson, Maxim, Ramirez-Gonzalez, Ricardo H., Caccamo, Mario, Bernal, William, Heeney, Jonathan L.
Wydane w PLoS One (2015)

Coiled-coil protein Scy is a key component of a multiprotein assembly controlling polarized growth in Streptomyces

od Holmes, Neil A., Walshaw, John, Leggett, Richard M., Thibessard, Annabelle, Dalton, Kate A., Gillespie, Michael D., Hemmings, Andrew M., Gust, Bertolt, Kelemen, Gabriella H.
Wydane 2013

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating popul...

od Jupe, Florian, Witek, Kamil, Verweij, Walter, Śliwka, Jadwiga, Pritchard, Leighton, Etherington, Graham J, Maclean, Dan, Cock, Peter J, Leggett, Richard M, Bryan, Glenn J, Cardle, Linda, Hein, Ingo, Jones, Jonathan DG
Wydane 2013

Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens

od Leggett, Richard M., Alcon-Giner, Cristina, Heavens, Darren, Caim, Shabhonam, Brook, Thomas C., Kujawska, Magdalena, Martin, Samuel, Peel, Ned, Acford-Palmer, Holly, Hoyles, Lesley, Clarke, Paul, Hall, Lindsay J., Clark, Matthew D.
Wydane w Nat Microbiol (2019)

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry

od Jain, Miten, Tyson, John R., Loose, Matthew, Ip, Camilla L.C., Eccles, David A., O'Grady, Justin, Malla, Sunir, Leggett, Richard M., Wallerman, Ola, Jansen, Hans J., Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L., Snutch, Terrance P., Olsen, Hugh E.
Wydane w F1000Res (2017)

Metagenomic study of the viruses of African straw-coloured fruit bats: Detection of a chiropteran poxvirus and isolation of a novel adenovirus

od Baker, Kate S., Leggett, Richard M., Bexfield, Nicholas H., Alston, Mark, Daly, Gordon, Todd, Shawn, Tachedjian, Mary, Holmes, Clare E.G., Crameri, Sandra, Wang, Lin-Fa, Heeney, Jonathan L., Suu-Ire, Richard, Kellam, Paul, Cunningham, Andrew A., Wood, James L.N., Caccamo, Mario, Murcia, Pablo R.
Wydane 2013

Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

od Reddington, Kate, Eccles, David, O'Grady, Justin, Drown, Devin M, Hansen, Lars Hestbjerg, Nielsen, Tue Kjærgaard, Ducluzeau, Anne-Lise, Leggett, Richard M, Heavens, Darren, Peel, Ned, Snutch, Terrance P, Bayega, Anthony, Oikonomopoulos, Spyridon, Ragoussis, Jiannis, Barry, Thomas, van der Helm, Eric, Jolic, Dino, Richardson, Hollian, Jansen, Hans, Tyson, John R, Jain, Miten, Brown, Bonnie L
Wydane w Gigascience (2020)

Corrigendum to: Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

od Reddington, Kate, Eccles, David, O'Grady, Justin, Drown, Devin M, Hansen, Lars Hestbjerg, Nielsen, Tue Kjærgaard, Ducluzeau, Anne-Lise, Leggett, Richard M, Heavens, Darren, Peel, Ned, Snutch, Terrance P, Bayega, Anthony, Oikonomopoulos, Spyridon, Ragoussis, Jiannis, Barry, Thomas, van der Helm, Eric, Jolic, Dino, Richardson, Hollian, Jansen, Hans, Tyson, John R, Jain, Miten, Brown, Bonnie L
Wydane w Gigascience (2020)

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

od Ip, Camilla L.C., Loose, Matthew, Tyson, John R., de Cesare, Mariateresa, Brown, Bonnie L., Jain, Miten, Leggett, Richard M., Eccles, David A., Zalunin, Vadim, Urban, John M., Piazza, Paolo, Bowden, Rory J., Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M., Simpson, Jared T., Snutch, Terrance P., Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J., O'Grady, Justin, Olsen, Hugh E.
Wydane w F1000Res (2015)