Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction

Yazar: Laczny, Cedric C., Pinel, Nicolás, Vlassis, Nikos, Wilmes, Paul
Baskı/Yayın Bilgisi 2014

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation

Yazar: Laczny, Cedric C., Kiefer, Christina, Galata, Valentina, Fehlmann, Tobias, Backes, Christina, Keller, Andreas
Yayımlandı Nucleic Acids Res (2017)

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

Yazar: Laczny, Cedric C, Sternal, Tomasz, Plugaru, Valentin, Gawron, Piotr, Atashpendar, Arash, Margossian, Houry Hera, Coronado, Sergio, der Maaten, Laurens van, Vlassis, Nikos, Wilmes, Paul
Yayımlandı Microbiome (2015)

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract

Yazar: Laczny, Cedric C., Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A., Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul
Yayımlandı Front Microbiol (2016)

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Yazar: Narayanasamy, Shaman, Jarosz, Yohan, Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Kaysen, Anne, Laczny, Cédric C., Pinel, Nicolás, May, Patrick, Wilmes, Paul
Yayımlandı Genome Biol (2016)

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model

Yazar: Rupf, Stefan, Laczny, Cedric C., Galata, Valentina, Backes, Christina, Keller, Andreas, Umanskaya, Natalia, Erol, Arzu, Tierling, Sascha, Lo Porto, Christina, Walter, Jörn, Kirsch, Jasmin, Hannig, Matthias, Hannig, Christian
Yayımlandı Sci Rep (2018)

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Yazar: Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Yayımlandı Stand Genomic Sci (2017)

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Yazar: Wampach, Linda, Heintz-Buschart, Anna, Hogan, Angela, Muller, Emilie E. L., Narayanasamy, Shaman, Laczny, Cedric C., Hugerth, Luisa W., Bindl, Lutz, Bottu, Jean, Andersson, Anders F., de Beaufort, Carine, Wilmes, Paul
Yayımlandı Front Microbiol (2017)

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics

Yazar: Hayoun, Karim, Geersens, Emilie, Laczny, Cédric C., Halder, Rashi, Lázaro Sánchez, Carmen, Manna, Abhijit, Bringel, Françoise, Ryckelynck, Michaël, Wilmes, Paul, Muller, Emilie E. L., Alpha-Bazin, Béatrice, Armengaud, Jean, Vuilleumier, Stéphane
Yayımlandı Microorganisms (2020)

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates

Yazar: Galata, Valentina, Laczny, Cédric C., Backes, Christina, Hemmrich-Stanisak, Georg, Schmolke, Susanne, Franke, Andre, Meese, Eckart, Herrmann, Mathias, von Müller, Lutz, Plum, Achim, Müller, Rolf, Stähler, Cord, Posch, Andreas E., Keller, Andreas
Yayımlandı Genomics Proteomics Bioinformatics (2019)

Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics

Yazar: De Saedeleer, Bianca, Malabirade, Antoine, Ramiro-Garcia, Javier, Habier, Janine, Trezzi, Jean-Pierre, Peters, Samantha L., Daujeumont, Annegrät, Halder, Rashi, Jäger, Christian, Busi, Susheel Bhanu, May, Patrick, Oertel, Wolfgang, Mollenhauer, Brit, Laczny, Cédric C., Hettich, Robert L., Wilmes, Paul
Yayımlandı ISME Commun (2021)

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Yazar: Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Yayımlandı NPJ Biofilms Microbiomes (2015)

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Yazar: Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Yayımlandı Nat Commun (2014)

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

Yazar: Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Yayımlandı Nat Microbiol (2020)

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

Yazar: Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Yayımlandı Nat Commun (2020)