Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction

Por Laczny, Cedric C., Pinel, Nicolás, Vlassis, Nikos, Wilmes, Paul
Publicado em 2014

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation

Por Laczny, Cedric C., Kiefer, Christina, Galata, Valentina, Fehlmann, Tobias, Backes, Christina, Keller, Andreas
Publicado no Nucleic Acids Res (2017)

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

Por Laczny, Cedric C, Sternal, Tomasz, Plugaru, Valentin, Gawron, Piotr, Atashpendar, Arash, Margossian, Houry Hera, Coronado, Sergio, der Maaten, Laurens van, Vlassis, Nikos, Wilmes, Paul
Publicado no Microbiome (2015)

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract

Por Laczny, Cedric C., Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A., Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul
Publicado no Front Microbiol (2016)

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Por Narayanasamy, Shaman, Jarosz, Yohan, Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Kaysen, Anne, Laczny, Cédric C., Pinel, Nicolás, May, Patrick, Wilmes, Paul
Publicado no Genome Biol (2016)

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model

Por Rupf, Stefan, Laczny, Cedric C., Galata, Valentina, Backes, Christina, Keller, Andreas, Umanskaya, Natalia, Erol, Arzu, Tierling, Sascha, Lo Porto, Christina, Walter, Jörn, Kirsch, Jasmin, Hannig, Matthias, Hannig, Christian
Publicado no Sci Rep (2018)

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Por Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Publicado no Stand Genomic Sci (2017)

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Por Wampach, Linda, Heintz-Buschart, Anna, Hogan, Angela, Muller, Emilie E. L., Narayanasamy, Shaman, Laczny, Cedric C., Hugerth, Luisa W., Bindl, Lutz, Bottu, Jean, Andersson, Anders F., de Beaufort, Carine, Wilmes, Paul
Publicado no Front Microbiol (2017)

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics

Por Hayoun, Karim, Geersens, Emilie, Laczny, Cédric C., Halder, Rashi, Lázaro Sánchez, Carmen, Manna, Abhijit, Bringel, Françoise, Ryckelynck, Michaël, Wilmes, Paul, Muller, Emilie E. L., Alpha-Bazin, Béatrice, Armengaud, Jean, Vuilleumier, Stéphane
Publicado no Microorganisms (2020)

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates

Por Galata, Valentina, Laczny, Cédric C., Backes, Christina, Hemmrich-Stanisak, Georg, Schmolke, Susanne, Franke, Andre, Meese, Eckart, Herrmann, Mathias, von Müller, Lutz, Plum, Achim, Müller, Rolf, Stähler, Cord, Posch, Andreas E., Keller, Andreas
Publicado no Genomics Proteomics Bioinformatics (2019)

Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics

Por De Saedeleer, Bianca, Malabirade, Antoine, Ramiro-Garcia, Javier, Habier, Janine, Trezzi, Jean-Pierre, Peters, Samantha L., Daujeumont, Annegrät, Halder, Rashi, Jäger, Christian, Busi, Susheel Bhanu, May, Patrick, Oertel, Wolfgang, Mollenhauer, Brit, Laczny, Cédric C., Hettich, Robert L., Wilmes, Paul
Publicado no ISME Commun (2021)

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado no NPJ Biofilms Microbiomes (2015)

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado no Nat Commun (2014)

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

Por Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Publicado no Nat Microbiol (2020)

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

Por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado no Nat Commun (2020)