Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction

Autor Laczny, Cedric C., Pinel, Nicolás, Vlassis, Nikos, Wilmes, Paul
Vydáno 2014

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation

Autor Laczny, Cedric C., Kiefer, Christina, Galata, Valentina, Fehlmann, Tobias, Backes, Christina, Keller, Andreas
Vydáno v Nucleic Acids Res (2017)

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

Autor Laczny, Cedric C, Sternal, Tomasz, Plugaru, Valentin, Gawron, Piotr, Atashpendar, Arash, Margossian, Houry Hera, Coronado, Sergio, der Maaten, Laurens van, Vlassis, Nikos, Wilmes, Paul
Vydáno v Microbiome (2015)

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract

Autor Laczny, Cedric C., Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A., Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul
Vydáno v Front Microbiol (2016)

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Autor Narayanasamy, Shaman, Jarosz, Yohan, Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Kaysen, Anne, Laczny, Cédric C., Pinel, Nicolás, May, Patrick, Wilmes, Paul
Vydáno v Genome Biol (2016)

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model

Autor Rupf, Stefan, Laczny, Cedric C., Galata, Valentina, Backes, Christina, Keller, Andreas, Umanskaya, Natalia, Erol, Arzu, Tierling, Sascha, Lo Porto, Christina, Walter, Jörn, Kirsch, Jasmin, Hannig, Matthias, Hannig, Christian
Vydáno v Sci Rep (2018)

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Autor Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Vydáno v Stand Genomic Sci (2017)

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Autor Wampach, Linda, Heintz-Buschart, Anna, Hogan, Angela, Muller, Emilie E. L., Narayanasamy, Shaman, Laczny, Cedric C., Hugerth, Luisa W., Bindl, Lutz, Bottu, Jean, Andersson, Anders F., de Beaufort, Carine, Wilmes, Paul
Vydáno v Front Microbiol (2017)

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics

Autor Hayoun, Karim, Geersens, Emilie, Laczny, Cédric C., Halder, Rashi, Lázaro Sánchez, Carmen, Manna, Abhijit, Bringel, Françoise, Ryckelynck, Michaël, Wilmes, Paul, Muller, Emilie E. L., Alpha-Bazin, Béatrice, Armengaud, Jean, Vuilleumier, Stéphane
Vydáno v Microorganisms (2020)

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates

Autor Galata, Valentina, Laczny, Cédric C., Backes, Christina, Hemmrich-Stanisak, Georg, Schmolke, Susanne, Franke, Andre, Meese, Eckart, Herrmann, Mathias, von Müller, Lutz, Plum, Achim, Müller, Rolf, Stähler, Cord, Posch, Andreas E., Keller, Andreas
Vydáno v Genomics Proteomics Bioinformatics (2019)

Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics

Autor De Saedeleer, Bianca, Malabirade, Antoine, Ramiro-Garcia, Javier, Habier, Janine, Trezzi, Jean-Pierre, Peters, Samantha L., Daujeumont, Annegrät, Halder, Rashi, Jäger, Christian, Busi, Susheel Bhanu, May, Patrick, Oertel, Wolfgang, Mollenhauer, Brit, Laczny, Cédric C., Hettich, Robert L., Wilmes, Paul
Vydáno v ISME Commun (2021)

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Autor Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Vydáno v NPJ Biofilms Microbiomes (2015)

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Autor Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Vydáno v Nat Commun (2014)

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

Autor Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Vydáno v Nat Microbiol (2020)

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

Autor Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Vydáno v Nat Commun (2020)