Getting Started in Tiling Microarray Analysis

Por Liu, X. Shirley
Publicado em 2007

Analyzing ’omics data using hierarchical models

Por Ji, Hongkai, Liu, X Shirley
Publicado em 2010

Systematic Curation of miRBase Annotation Using Integrated Small RNA High-Throughput Sequencing Data for C. elegans and Drosophila

Por Wang, Xiangfeng, Liu, X. Shirley
Publicado em 2011

ChIP-Chip: Algorithms for Calling Binding Sites

Por Liu, X. Shirley, Meyer, Clifford A.
Publicado em 2009

Identifying and Mitigating Bias in Next-Generation Sequencing Methods for Chromatin Biology

Por Meyer, Clifford A., Liu, X. Shirley
Publicado no Nat Rev Genet (2014)

Applications of Immunogenomics to Cancer

Por Liu, X. Shirley, Mardis, Elaine R.
Publicado no Cell (2017)

Revisit linear regression-based deconvolution methods for tumor gene expression data

Por Li, Bo, Liu, Jun S., Liu, X. Shirley
Publicado no Genome Biol (2017)

Minireview: Applications of Next-Generation Sequencing on Studies of Nuclear Receptor Regulation and Function

Por Meyer, Clifford A., Tang, Qianzi, Liu, X. Shirley
Publicado em 2012

xMAN: extreme MApping of OligoNucleotides

Por Li, Wei, Carroll, Jason S, Brown, Myles, Liu, X Shirley
Publicado em 2008

A high-resolution map of nucleosome positioning on a fission yeast centromere

Por Song, Jun S., Liu, Xingkun, Liu, X. Shirley, He, Xiangwei
Publicado em 2008

Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

Por Zhang, Yong, Liu, X. Shirley, Liu, Qing-Rong, Wei, Liping
Publicado em 2006

Active enhancers are delineated de novo during hematopoiesis, with limited lineage fidelity among specified primary blood cells

Por Luyten, Annouck, Zang, Chongzhi, Liu, X. Shirley, Shivdasani, Ramesh A.
Publicado em 2014

The Role of Notch Receptors in Transcriptional Regulation

Por WANG, HONGFANG, ZANG, CHONGZHI, LIU, X. SHIRLEY, ASTER, JON C.
Publicado no J Cell Physiol (2015)

Integrating regulatory motif discovery and genome-wide expression analysis

Por Conlon, Erin M., Liu, X. Shirley, Lieb, Jason D., Liu, Jun S.
Publicado em 2003

CEAS: cis-regulatory element annotation system

Por Ji, Xuwo, Li, Wei, Song, Jun, Wei, Liping, Liu, X. Shirley
Publicado em 2006

Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq

Por Zhang, Yong, Shin, Hyunjin, Song, Jun S, Lei, Ying, Liu, X Shirley
Publicado em 2008

BINOCh: binding inference from nucleosome occupancy changes

Por Meyer, Clifford A., He, Housheng H., Brown, Myles, Liu, X. Shirley
Publicado em 2011

DiNuP: a systematic approach to identify regions of differential nucleosome positioning

Por Fu, Kai, Tang, Qianzi, Feng, Jianxing, Liu, X. Shirley, Zhang, Yong
Publicado em 2012

Computational methodology for ChIP-seq analysis

Por Shin, Hyunjin, Liu, Tao, Duan, Xikun, Zhang, Yong, Liu, X. Shirley
Publicado no Quant Biol (2013)

Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics

Por Liu, Yueyi, Liu, X. Shirley, Wei, Liping, Altman, Russ B., Batzoglou, Serafim
Publicado em 2004