The role of predictive modelling in rationally re-engineering biological systems

Por Koide, Tie, Pang, Wyming Lee, Baliga, Nitin S.
Publicado em 2009

Global Gene Expression Analysis of the Heat Shock Response in the Phytopathogen Xylella fastidiosa

Por Koide, Tie, Vêncio, Ricardo Z. N., Gomes, Suely L.
Publicado em 2006

A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability

Por Schmid, Amy K, Reiss, David J, Pan, Min, Koide, Tie, Baliga, Nitin S
Publicado em 2009

Integration and visualization of systems biology data in context of the genome

Por Bare, J Christopher, Koide, Tie, Reiss, David J, Tenenbaum, Dan, Baliga, Nitin S
Publicado em 2010

Global gene expression under nitrogen starvation in <it>Xylella fastidiosa</it>: contribution of the σ⁵⁴regulon

Por da Silva Neto José F, Koide Tie, Gomes Suely L, Marques Marilis V
Publicado em 2010-08-01

BayGO: Bayesian analysis of ontology term enrichment in microarray data

Por Vêncio, Ricardo ZN, Koide, Tie, Gomes, Suely L, de B Pereira, Carlos A
Publicado em 2006

The Single Extracytoplasmic-Function Sigma Factor of Xylella fastidiosa Is Involved in the Heat Shock Response and Presents an Unusual Regulatory Mechanism

Por da Silva Neto, José F., Koide, Tie, Gomes, Suely L., Marques, Marilis V.
Publicado em 2007

Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii

Por Salem-Izacc, Silvia M., Koide, Tie, Vêncio, Ricardo Z. N., Gomes, Suely L.
Publicado em 2009

Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the σ(54 )regulon

Por da Silva Neto, José F, Koide, Tie, Gomes, Suely L, Marques, Marilis V
Publicado em 2010

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

Por Zaramela, Livia S., Vêncio, Ricardo Z. N., ten-Caten, Felipe, Baliga, Nitin S., Koide, Tie
Publicado em 2014

Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum

Por Silva-Rocha, Rafael, Pontelli, Marjorie Cornejo, Furtado, Gilvan Pessoa, Zaramela, Livia Soares, Koide, Tie
Publicado no PLoS One (2015)

The F-box Protein FBXO25 Promotes the Proteasome-dependent Degradation of ELK-1 Protein

Por Teixeira, Felipe R., Manfiolli, Adriana O., Soares, Cláudia S., Baqui, Munira M. A., Koide, Tie, Gomes, Marcelo D.
Publicado em 2013

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

Por Gomes-Filho, José Vicente, Zaramela, Livia Soares, Italiani, Valéria Cristina da Silva, Baliga, Nitin S, Vêncio, Ricardo Z N, Koide, Tie
Publicado no RNA Biol (2015)

Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease

Por Teixeira, Felipe Roberti, Randle, Suzanne J., Patel, Shachi P., Mevissen, Tycho E.T., Zenkeviciute, Grasilda, Koide, Tie, Komander, David, Laman, Heike
Publicado no Biochem J (2016)

Halobacterium salinarum NRC-1 PeptideAtlas: strategies for targeted proteomics

Por Van, Phu T., Schmid, Amy K., King, Nichole L., Kaur, Amardeep, Pan, Min, Whitehead, Kenia, Koide, Tie, Facciotti, Marc T., Goo, Young-Ah, Deutsch, Eric W., Reiss, David J., Mallick, Parag, Baliga, Nitin S.
Publicado em 2008

Iron Deficiency Generates Oxidative Stress and Activation of the SOS Response in Caulobacter crescentus

Por Leaden, Laura, Silva, Larissa G., Ribeiro, Rodolfo A., dos Santos, Naara M., Lorenzetti, Alan P. R., Alegria, Thiago G. P., Schulz, Mariane L., Medeiros, Marisa H. G., Koide, Tie, Marques, Marilis V.
Publicado no Front Microbiol (2018)

Prevalence of transcription promoters within archaeal operons and coding sequences

Por Koide, Tie, Reiss, David J, Bare, J Christopher, Pang, Wyming Lee, Facciotti, Marc T, Schmid, Amy K, Pan, Min, Marzolf, Bruz, Van, Phu T, Lo, Fang-Yin, Pratap, Abhishek, Deutsch, Eric W, Peterson, Amelia, Martin, Dan, Baliga, Nitin S
Publicado em 2009

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

Por Facciotti, Marc T, Pang, Wyming L, Lo, Fang-yin, Whitehead, Kenia, Koide, Tie, Masumura, Ken-ichi, Pan, Min, Kaur, Amardeep, Larsen, David J, Reiss, David J, Hoang, Linh, Kalisiak, Ewa, Northen, Trent, Trauger, Sunia A, Siuzdak, Gary, Baliga, Nitin S
Publicado em 2010

DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence

Por Koide, Tie, Zaini, Paulo A., Moreira, Leandro M., Vêncio, Ricardo Z. N., Matsukuma, Adriana Y., Durham, Alan M., Teixeira, Diva C., El-Dorry, Hamza, Monteiro, Patrícia B., da Silva, Ana Claudia R., Verjovski-Almeida, Sergio, da Silva, Aline M., Gomes, Suely L.
Publicado em 2004