2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Yazar: Parker, Matthew T., Knop, Katarzyna, Barton, Geoffrey J., Simpson, Gordon G.
Yayımlandı Genome Biol (2021)

Active 5΄ splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes

Yazar: Knop, Katarzyna, Stepien, Agata, Barciszewska-Pacak, Maria, Taube, Michal, Bielewicz, Dawid, Michalak, Michal, Borst, Jan W., Jarmolowski, Artur, Szweykowska-Kulinska, Zofia
Yayımlandı Nucleic Acids Res (2017)

A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis

Yazar: Plewka, Patrycja, Thompson, Agnieszka, Szymanski, Maciej, Nuc, Przemyslaw, Knop, Katarzyna, Rasinska, Agnieszka, Bialkowska, Aleksandra, Szweykowska-Kulinska, Zofia, Karlowski, Wojciech M., Jarmolowski, Artur
Yayımlandı RNA Biol (2018)

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m(6)A modification

Yazar: Parker, Matthew T, Knop, Katarzyna, Sherwood, Anna V, Schurch, Nicholas J, Mackinnon, Katarzyna, Gould, Peter D, Hall, Anthony JW, Barton, Geoffrey J, Simpson, Gordon G
Yayımlandı eLife (2020)

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

Yazar: Barciszewska-Pacak, Maria, Milanowska, Kaja, Knop, Katarzyna, Bielewicz, Dawid, Nuc, Przemyslaw, Plewka, Patrycja, Pacak, Andrzej M., Vazquez, Franck, Karlowski, Wojciech, Jarmolowski, Artur, Szweykowska-Kulinska, Zofia
Yayımlandı Front Plant Sci (2015)

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

Yazar: Parker, Matthew T, Knop, Katarzyna, Zacharaki, Vasiliki, Sherwood, Anna V, Tomé, Daniel, Yu, Xuhong, Martin, Pascal GP, Beynon, Jim, Michaels, Scott D, Barton, Geoffrey J, Simpson, Gordon G
Yayımlandı eLife (2021)

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs

Yazar: Zielezinski, Andrzej, Dolata, Jakub, Alaba, Sylwia, Kruszka, Katarzyna, Pacak, Andrzej, Swida-Barteczka, Aleksandra, Knop, Katarzyna, Stepien, Agata, Bielewicz, Dawid, Pietrykowska, Halina, Sierocka, Izabela, Sobkowiak, Lukasz, Lakomiak, Alicja, Jarmolowski, Artur, Szweykowska-Kulinska, Zofia, Karlowski, Wojciech M.
Yayımlandı BMC Plant Biol (2015)