2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Por Parker, Matthew T., Knop, Katarzyna, Barton, Geoffrey J., Simpson, Gordon G.
Publicado no Genome Biol (2021)

Active 5΄ splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes

Por Knop, Katarzyna, Stepien, Agata, Barciszewska-Pacak, Maria, Taube, Michal, Bielewicz, Dawid, Michalak, Michal, Borst, Jan W., Jarmolowski, Artur, Szweykowska-Kulinska, Zofia
Publicado no Nucleic Acids Res (2017)

A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis

Por Plewka, Patrycja, Thompson, Agnieszka, Szymanski, Maciej, Nuc, Przemyslaw, Knop, Katarzyna, Rasinska, Agnieszka, Bialkowska, Aleksandra, Szweykowska-Kulinska, Zofia, Karlowski, Wojciech M., Jarmolowski, Artur
Publicado no RNA Biol (2018)

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m(6)A modification

Por Parker, Matthew T, Knop, Katarzyna, Sherwood, Anna V, Schurch, Nicholas J, Mackinnon, Katarzyna, Gould, Peter D, Hall, Anthony JW, Barton, Geoffrey J, Simpson, Gordon G
Publicado no eLife (2020)

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

Por Barciszewska-Pacak, Maria, Milanowska, Kaja, Knop, Katarzyna, Bielewicz, Dawid, Nuc, Przemyslaw, Plewka, Patrycja, Pacak, Andrzej M., Vazquez, Franck, Karlowski, Wojciech, Jarmolowski, Artur, Szweykowska-Kulinska, Zofia
Publicado no Front Plant Sci (2015)

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs

Por Zielezinski, Andrzej, Dolata, Jakub, Alaba, Sylwia, Kruszka, Katarzyna, Pacak, Andrzej, Swida-Barteczka, Aleksandra, Knop, Katarzyna, Stepien, Agata, Bielewicz, Dawid, Pietrykowska, Halina, Sierocka, Izabela, Sobkowiak, Lukasz, Lakomiak, Alicja, Jarmolowski, Artur, Szweykowska-Kulinska, Zofia, Karlowski, Wojciech M.
Publicado no BMC Plant Biol (2015)