Multiple kernel learning for integrative consensus clustering of omic datasets

著者: Cabassi, Alessandra, Kirk, Paul D W
出版年 Bioinformatics (2020)

Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data

著者: Kirk, Paul D. W., Stumpf, Michael P. H.
出版事項 2009

Fast approximate inference for variable selection in Dirichlet process mixtures, with an application to pan-cancer proteomics

著者: Crook, Oliver M., Gatto, Laurent, Kirk, Paul D.W.
出版年 Stat Appl Genet Mol Biol (2019)

Parameter Inference for Biochemical Systems that Undergo a Hopf Bifurcation

著者: Kirk, Paul D. W., Toni, Tina, Stumpf, Michael P. H.
出版事項 2008

A graph theoretical approach to data fusion

著者: Žurauskienė, Justina, Kirk, Paul D.W., Stumpf, Michael P.H.
出版年 Stat Appl Genet Mol Biol (2016)

Semi-Supervised Non-Parametric Bayesian Modelling of Spatial Proteomics

著者: Crook, Oliver M., Lilley, Kathryn S., Gatto, Laurent, Kirk, Paul D.W.
出版年 Ann Appl Stat (2022)

Cellular population dynamics control the robustness of the stem cell niche

著者: MacLean, Adam L., Kirk, Paul D. W., Stumpf, Michael P. H.
出版年 Biol Open (2015)

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution

著者: Strauss, Magdalena E, Kirk, Paul D W, Reid, John E, Wernisch, Lorenz
出版年 Bioinformatics (2020)

MR-Clust: clustering of genetic variants in Mendelian randomization with similar causal estimates

著者: Foley, Christopher N, Mason, Amy M, Kirk, Paul D W, Burgess, Stephen
出版年 Bioinformatics (2020)

A Bayesian semi-parametric model for thermal proteome profiling

著者: Fang, Siqi, Kirk, Paul D. W., Bantscheff, Marcus, Lilley, Kathryn S., Crook, Oliver M.
出版年 Commun Biol (2021)

A Bayesian mixture modelling approach for spatial proteomics

著者: Crook, Oliver M., Mulvey, Claire M., Kirk, Paul D. W., Lilley, Kathryn S., Gatto, Laurent
出版年 PLoS Comput Biol (2018)

A Bioconductor workflow for the Bayesian analysis of spatial proteomics

著者: Crook, Oliver M., Breckels, Lisa M., Lilley, Kathryn S., Kirk, Paul D.W., Gatto, Laurent
出版年 F1000Res (2019)

Model Selection in Systems Biology Depends on Experimental Design

著者: Silk, Daniel, Kirk, Paul D. W., Barnes, Chris P., Toni, Tina, Stumpf, Michael P. H.
出版事項 2014

Retroviruses integrate into a shared, non-palindromic DNA motif

著者: Kirk, Paul D. W., Huvet, Maxime, Melamed, Anat, Maertens, Goedele N., Bangham, Charles R. M.
出版年 Nat Microbiol (2016)

Accelerating Bayesian Hierarchical Clustering of Time Series Data with a Randomised Algorithm

著者: Darkins, Robert, Cooke, Emma J., Ghahramani, Zoubin, Kirk, Paul D. W., Wild, David L., Savage, Richard S.
出版事項 2013

Detection of quantitative trait loci from RNA-seq data with or without genotypes using BaseQTL

著者: Vigorito, Elena, Lin, Wei-Yu, Starr, Colin, Kirk, Paul D. W., White, Simon R., Wallace, Chris
出版年 Nat Comput Sci (2021)

Bayesian profile regression for clustering analysis involving a longitudinal response and explanatory variables

著者: Rouanet, Anaïs, Johnson, Rob, Strauss, Magdalena, Richardson, Sylvia, Tom, Brian D, White, Simon R, Kirk, Paul D. W.
出版年 Methodology (Gott) (2024)

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection

著者: Crook, Oliver M., Geladaki, Aikaterini, Nightingale, Daniel J. H., Vennard, Owen L., Lilley, Kathryn S., Gatto, Laurent, Kirk, Paul D. W.
出版年 PLoS Comput Biol (2020)

MEANS: python package for Moment Expansion Approximation, iNference and Simulation

著者: Fan, Sisi, Geissmann, Quentin, Lakatos, Eszter, Lukauskas, Saulius, Ale, Angelique, Babtie, Ann C., Kirk, Paul D. W., Stumpf, Michael P. H.
出版年 Bioinformatics (2016)

Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes

著者: Silk, Daniel, Kirk, Paul D.W., Barnes, Chris P., Toni, Tina, Rose, Anna, Moon, Simon, Dallman, Margaret J., Stumpf, Michael P.H.
出版事項 2011