Creating reusable tools from scripts: the Galaxy Tool Factory

Por Lazarus, Ross, Kaspi, Antony, Ziemann, Mark
Publicado em 2012

Evaluation of microRNA alignment techniques

Por Ziemann, Mark, Kaspi, Antony, El-Osta, Assam
Publicado no RNA (2016)

Motif analysis in DNAse hypersensitivity regions uncovers distal cis elements associated with gene expression

Por Ziemann, Mark, Kaspi, Antony, Lazarus, Ross, El-Osta, Assam
Publicado em 2013

Combining target enrichment with barcode multiplexing for high throughput SNP discovery

Por Cummings, Nik, King, Rob, Rickers, Andre, Kaspi, Antony, Lunke, Sebastian, Haviv, Izhak, Jowett, Jeremy BM
Publicado em 2010

Non-referenced genome assembly from epigenomic short-read data

Por Kaspi, Antony, Ziemann, Mark, Keating, Samuel T, Khurana, Ishant, Connor, Timothy, Spolding, Briana, Cooper, Adrian, Lazarus, Ross, Walder, Ken, Zimmet, Paul, El-Osta, Assam
Publicado no Epigenetics (2014)

Etiology matters – Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy

Por Dębski, Konrad J., Pitkanen, Asla, Puhakka, Noora, Bot, Anna M., Khurana, Ishant, Harikrishnan, KN, Ziemann, Mark, Kaspi, Antony, El-Osta, Assam, Lukasiuk, Katarzyna, Kobow, Katja
Publicado no Sci Rep (2016)

Deep sequencing reveals increased DNA methylation in chronic rat epilepsy

Por Kobow, Katja, Kaspi, Antony, Harikrishnan, K. N., Kiese, Katharina, Ziemann, Mark, Khurana, Ishant, Fritzsche, Ina, Hauke, Jan, Hahnen, Eric, Coras, Roland, Mühlebner, Angelika, El-Osta, Assam, Blümcke, Ingmar
Publicado em 2013

Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells

Por Pirola, Luciano, Balcerczyk, Aneta, Tothill, Richard W., Haviv, Izhak, Kaspi, Antony, Lunke, Sebastian, Ziemann, Mark, Karagiannis, Tom, Tonna, Stephen, Kowalczyk, Adam, Beresford-Smith, Bryan, Macintyre, Geoff, Kelong, Ma, Hongyu, Zhang, Zhu, Jingde, El-Osta, Assam
Publicado em 2011

Epigenetic Regulation of Cell Type–Specific Expression Patterns in the Human Mammary Epithelium

Por Maruyama, Reo, Choudhury, Sibgat, Kowalczyk, Adam, Bessarabova, Marina, Beresford-Smith, Bryan, Conway, Thomas, Kaspi, Antony, Wu, Zhenhua, Nikolskaya, Tatiana, Merino, Vanessa F., Lo, Pang-Kuo, Liu, X. Shirley, Nikolsky, Yuri, Sukumar, Saraswati, Haviv, Izhak, Polyak, Kornelia
Publicado em 2011

Vascular histone deacetylation by pharmacological HDAC inhibition

Por Rafehi, Haloom, Balcerczyk, Aneta, Lunke, Sebastian, Kaspi, Antony, Ziemann, Mark, KN, Harikrishnan, Okabe, Jun, Khurana, Ishant, Ooi, Jenny, Khan, Abdul Waheed, Du, Xiao-Jun, Chang, Lisa, Haviv, Izhak, Keating, Samuel T., Karagiannis, Tom C., El-Osta, Assam
Publicado em 2014

Rapid Development of Non-Alcoholic Steatohepatitis in Psammomys obesus (Israeli Sand Rat)

Por Spolding, Briana, Connor, Timothy, Wittmer, Carrie, Abreu, Lelia L. F., Kaspi, Antony, Ziemann, Mark, Kaur, Gunveen, Cooper, Adrian, Morrison, Shona, Lee, Scott, Sinclair, Andrew, Gibert, Yann, Trevaskis, James L., Roth, Jonathon D., El-Osta, Assam, Standish, Richard, Walder, Ken
Publicado em 2014

Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics

Por Choudhury, Sibgat, Almendro, Vanessa, Merino, Vanessa F., Wu, Zhenhua, Maruyama, Reo, Su, Ying, Martins, Filipe C., Fackler, Mary Jo, Bessarabova, Marina, Kowalczyk, Adam, Conway, Thomas, Beresford-Smith, Bryan, Macintyre, Geoff, Cheng, Yu-Kang, Lopez-Bujanda, Zoila, Kaspi, Antony, Hu, Rong, Robens, Judith, Nikolskaya, Tatiana, Haakensen, Vilde D., Schnitt, Stuart J., Argani, Pedram, Ethington, Gabrielle, Panos, Laura, Grant, Michael, Clark, Jason, Herlihy, William, Lin, S. Joyce, Chew, Grace, Thompson, Erik W., Greene-Colozzi, April, Richardson, Andrea L., Rosson, Gedge D., Pike, Malcolm, Garber, Judy E., Nikolsky, Yuri, Blum, Joanne L., Au, Alfred, Hwang, E. Shelley, Tamimi, Rulla M., Michor, Franziska, Haviv, Izhak, Liu, X. Shirley, Sukumar, Saraswati, Polyak, Kornelia
Publicado em 2013