Gradients in nucleotide and codon usage along Escherichia coli genes

od Hooper, Sean D., Berg, Otto G.
Izdano 2000

Duplication is more common among laterally transferred genes than among indigenous genes

od Hooper, Sean D, Berg, Otto G
Izdano 2003

Microbial co-habitation and lateral gene transfer: what transposases can tell us

od Hooper, Sean D, Mavromatis, Konstantinos, Kyrpides, Nikos C
Izdano 2009

Environments shape the nucleotide composition of genomes

od Foerstner, Konrad U, von Mering, Christian, Hooper, Sean D, Bork, Peer
Izdano 2005

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

od Pavlopoulos, Georgios A., Pafilis, Evangelos, Kuhn, M., Hooper, Sean D., Schneider, Reinhard
Izdano 2009

Medusa: A tool for exploring and clustering biological networks

od Pavlopoulos, Georgios A, Hooper, Sean D, Sifrim, Alejandro, Schneider, Reinhard, Aerts, Jan
Izdano 2011

jClust: a clustering and visualization toolbox

od Pavlopoulos, Georgios A., Moschopoulos, Charalampos N., Hooper, Sean D., Schneider, Reinhard, Kossida, Sophia
Izdano 2009

A Molecular Study of Microbe Transfer between Distant Environments

od Hooper, Sean D., Raes, Jeroen, Foerstner, Konrad U., Harrington, Eoghan D., Dalevi, Daniel, Bork, Peer
Izdano 2008

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

od Hooper, Sean D., Anderson, Iain J., Pati, Amrita, Dalevi, Daniel, Mavromatis, Konstantinos, Kyrpides, Nikos C.
Izdano 2009

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

od Mavromatis, Konstantinos, Chu, Ken, Ivanova, Natalia, Hooper, Sean D., Markowitz, Victor M., Kyrpides, Nikos C.
Izdano 2009

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

od Hooper, Sean D., Dalevi, Daniel, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Izdano 2010

Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements

od Hooper, Sean D, Jiao, Xiang, Sundström, Elisabeth, Rehman, Farah L, Tellgren-Roth, Christian, Sjöblom, Tobias, Cavelier, Lucia
Izdano 2012

Structural Alterations from Multiple Displacement Amplification of a Human Genome Revealed by Mate-Pair Sequencing

od Jiao, Xiang, Rosenlund, Magnus, Hooper, Sean D., Tellgren-Roth, Christian, He, Liqun, Fu, Yutao, Mangion, Jonathan, Sjöblom, Tobias
Izdano 2011

Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder

od Hooper, Sean D, Johansson, Anna CV, Tellgren-Roth, Christian, Stattin, Eva-Lena, Dahl, Niklas, Cavelier, Lucia, Feuk, Lars
Izdano 2012

Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

od Jiao, Xiang, Hooper, Sean D, Djureinovic, Tatjana, Larsson, Chatarina, Wärnberg, Fredrik, Tellgren-Roth, Christian, Botling, Johan, Sjöblom, Tobias
Izdano 2013

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

od Anderson, Iain, Scheuner, Carmen, Göker, Markus, Mavromatis, Kostas, Hooper, Sean D., Porat, Iris, Klenk, Hans-Peter, Ivanova, Natalia, Kyrpides, Nikos
Izdano 2011

Systematic Association of Genes to Phenotypes by Genome and Literature Mining

od Korbel, Jan O, Doerks, Tobias, Jensen, Lars J, Perez-Iratxeta, Carolina, Kaczanowski, Szymon, Hooper, Sean D, Andrade, Miguel A, Bork, Peer
Izdano 2005

STRING: known and predicted protein–protein associations, integrated and transferred across organisms

od von Mering, Christian, Jensen, Lars J., Snel, Berend, Hooper, Sean D., Krupp, Markus, Foglierini, Mathilde, Jouffre, Nelly, Huynen, Martijn A., Bork, Peer
Izdano 2005

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

od Hooper, Sean D, Boué, Stephanie, Krause, Roland, Jensen, Lars J, Mason, Christopher E, Ghanim, Murad, White, Kevin P, Furlong, Eileen EM, Bork, Peer
Izdano 2007

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

od Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D., Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat, Kyrpides, Nikos C.
Izdano 2009