Gradients in nucleotide and codon usage along Escherichia coli genes

von Hooper, Sean D., Berg, Otto G.
Veröffentlicht 2000

Duplication is more common among laterally transferred genes than among indigenous genes

von Hooper, Sean D, Berg, Otto G
Veröffentlicht 2003

Microbial co-habitation and lateral gene transfer: what transposases can tell us

von Hooper, Sean D, Mavromatis, Konstantinos, Kyrpides, Nikos C
Veröffentlicht 2009

Environments shape the nucleotide composition of genomes

von Foerstner, Konrad U, von Mering, Christian, Hooper, Sean D, Bork, Peer
Veröffentlicht 2005

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

von Pavlopoulos, Georgios A., Pafilis, Evangelos, Kuhn, M., Hooper, Sean D., Schneider, Reinhard
Veröffentlicht 2009

Medusa: A tool for exploring and clustering biological networks

von Pavlopoulos, Georgios A, Hooper, Sean D, Sifrim, Alejandro, Schneider, Reinhard, Aerts, Jan
Veröffentlicht 2011

jClust: a clustering and visualization toolbox

von Pavlopoulos, Georgios A., Moschopoulos, Charalampos N., Hooper, Sean D., Schneider, Reinhard, Kossida, Sophia
Veröffentlicht 2009

A Molecular Study of Microbe Transfer between Distant Environments

von Hooper, Sean D., Raes, Jeroen, Foerstner, Konrad U., Harrington, Eoghan D., Dalevi, Daniel, Bork, Peer
Veröffentlicht 2008

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

von Hooper, Sean D., Anderson, Iain J., Pati, Amrita, Dalevi, Daniel, Mavromatis, Konstantinos, Kyrpides, Nikos C.
Veröffentlicht 2009

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

von Mavromatis, Konstantinos, Chu, Ken, Ivanova, Natalia, Hooper, Sean D., Markowitz, Victor M., Kyrpides, Nikos C.
Veröffentlicht 2009

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

von Hooper, Sean D., Dalevi, Daniel, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Veröffentlicht 2010

Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements

von Hooper, Sean D, Jiao, Xiang, Sundström, Elisabeth, Rehman, Farah L, Tellgren-Roth, Christian, Sjöblom, Tobias, Cavelier, Lucia
Veröffentlicht 2012

Structural Alterations from Multiple Displacement Amplification of a Human Genome Revealed by Mate-Pair Sequencing

von Jiao, Xiang, Rosenlund, Magnus, Hooper, Sean D., Tellgren-Roth, Christian, He, Liqun, Fu, Yutao, Mangion, Jonathan, Sjöblom, Tobias
Veröffentlicht 2011

Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder

von Hooper, Sean D, Johansson, Anna CV, Tellgren-Roth, Christian, Stattin, Eva-Lena, Dahl, Niklas, Cavelier, Lucia, Feuk, Lars
Veröffentlicht 2012

Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

von Jiao, Xiang, Hooper, Sean D, Djureinovic, Tatjana, Larsson, Chatarina, Wärnberg, Fredrik, Tellgren-Roth, Christian, Botling, Johan, Sjöblom, Tobias
Veröffentlicht 2013

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

von Anderson, Iain, Scheuner, Carmen, Göker, Markus, Mavromatis, Kostas, Hooper, Sean D., Porat, Iris, Klenk, Hans-Peter, Ivanova, Natalia, Kyrpides, Nikos
Veröffentlicht 2011

Systematic Association of Genes to Phenotypes by Genome and Literature Mining

von Korbel, Jan O, Doerks, Tobias, Jensen, Lars J, Perez-Iratxeta, Carolina, Kaczanowski, Szymon, Hooper, Sean D, Andrade, Miguel A, Bork, Peer
Veröffentlicht 2005

STRING: known and predicted protein–protein associations, integrated and transferred across organisms

von von Mering, Christian, Jensen, Lars J., Snel, Berend, Hooper, Sean D., Krupp, Markus, Foglierini, Mathilde, Jouffre, Nelly, Huynen, Martijn A., Bork, Peer
Veröffentlicht 2005

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

von Hooper, Sean D, Boué, Stephanie, Krause, Roland, Jensen, Lars J, Mason, Christopher E, Ghanim, Murad, White, Kevin P, Furlong, Eileen EM, Bork, Peer
Veröffentlicht 2007

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

von Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D., Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat, Kyrpides, Nikos C.
Veröffentlicht 2009