Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

Bằng Hepp, Crystal M.
Xuất bản năm mSystems (2019)

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction

Bằng Sookdeo, Akash, Hepp, Crystal M., Boissinot, Stéphane
Xuất bản năm Mob DNA (2018)

Revisiting the evolution of mouse LINE-1 in the genomic era

Bằng Sookdeo, Akash, Hepp, Crystal M, McClure, Marcella A, Boissinot, Stéphane
Được phát hành 2013

Sample pooling methods for efficient pathogen screening: Practical implications

Bằng Furstenau, Tara N., Cocking, Jill H., Hepp, Crystal M., Fofanov, Viacheslav Y.
Xuất bản năm PLoS One (2020)

Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi

Bằng Sumampow, Thalita Christiani Pingkan, Shekelle, Myron, Beier, Paul, Walker, Faith M., Hepp, Crystal M.
Xuất bản năm PLoS One (2020)

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

Bằng Kaufman, Emily L., Stone, Nathan E., Scoles, Glen A., Hepp, Crystal M., Busch, Joseph D., Wagner, David M.
Xuất bản năm Parasit Vectors (2018)

Characterization of neonatal opioid withdrawal syndrome in Arizona from 2010-2017

Bằng Eaves, Emery R., Barber, Jarrett, Whealy, Ryann, Clancey, Sara A., Wright, Rita, Cocking, Jill Hager, Spadafino, Joseph, Hepp, Crystal M.
Xuất bản năm PLoS One (2021)

Guano exposed: Impact of aerobic conditions on bat fecal microbiota

Bằng Fofanov, Viacheslav Y., Furstenau, Tara N., Sanchez, Daniel, Hepp, Crystal M., Cocking, Jill, Sobek, Colin, Pagel, Nicole, Walker, Faith, Chambers, Carol L.
Xuất bản năm Ecol Evol (2018)

Health Disparities and Converging Epidemics in Jail Populations: Protocol for a Mixed-Methods Study

Bằng Trotter II, Robert T, Camplain, Ricky, Eaves, Emery R, Fofanov, Viacheslav Y, Dmitrieva, Natalia O, Hepp, Crystal M, Warren, Meghan, Barrios, Brianna A, Pagel, Nicole, Mayer, Alyssa, Baldwin, Julie A
Xuất bản năm JMIR Res Protoc (2018)

Health disparities in jail populations: Mixed methods and multi-disciplinary community engagement for justice and health impacts

Bằng Trotter, Robert T., Fofanov, Viacheslav Y., Camplain, Ricky, Arazan, Christine L., Camplain, Carolyn, Eaves, Emery R., Hanabury, Mary, Hepp, Crystal M, Kohlbeck, Bailey S., Lininger, Monica R., Peoples, Marie, Dmitrieva, Natalia O., Baldwin, Julie A.
Xuất bản năm Pract Anthropol (2019)

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague

Bằng Vogler, Amy J., Andrianaivoarimanana, Voahangy, Telfer, Sandra, Hall, Carina M., Sahl, Jason W., Hepp, Crystal M., Centner, Heather, Andersen, Genevieve, Birdsell, Dawn N., Rahalison, Lila, Nottingham, Roxanne, Keim, Paul, Wagner, David M., Rajerison, Minoarisoa
Xuất bản năm PLoS Negl Trop Dis (2017)

Genotyping of Burkholderia mallei from an Outbreak of Glanders in Bahrain Suggests Multiple Introduction Events

Bằng Scholz, Holger C., Pearson, Talima, Hornstra, Heidie, Projahn, Michaela, Terzioglu, Rahime, Wernery, Renate, Georgi, Enrico, Riehm, Julia M., Wagner, David M., Keim, Paul S., Joseph, Marina, Johnson, Bobby, Kinne, Joerg, Jose, Shanti, Hepp, Crystal M., Witte, Angela, Wernery, Ulrich
Được phát hành 2014

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

Bằng Engelthaler, David M., Roe, Chandler C., Hepp, Crystal M., Teixeira, Marcus, Driebe, Elizabeth M., Schupp, James M., Gade, Lalitha, Waddell, Victor, Komatsu, Kenneth, Arathoon, Eduardo, Logemann, Heidi, Thompson, George R., Chiller, Tom, Barker, Bridget, Keim, Paul, Litvintseva, Anastasia P.
Xuất bản năm mBio (2016)

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest

Bằng Roe, Chandler C., Bowers, Jolene, Oltean, Hanna, DeBess, Emilio, Dufresne, Philippe J., McBurney, Scott, Overy, David P., Wanke, Bodo, Lysen, Colleen, Chiller, Tom, Meyer, Wieland, Thompson, George R., Lockhart, Shawn R., Hepp, Crystal M., Engelthaler, David M.
Xuất bản năm mSphere (2018)

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Bằng Sahl, Jason W., Lemmer, Darrin, Travis, Jason, Schupp, James M., Gillece, John D., Aziz, Maliha, Driebe, Elizabeth M., Drees, Kevin P., Hicks, Nathan D., Williamson, Charles Hall Davis, Hepp, Crystal M., Smith, David Earl, Roe, Chandler, Engelthaler, David M., Wagner, David M., Keim, Paul
Xuất bản năm Microb Genom (2016)

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

Bằng Hepp, Crystal M., Cocking, Jill Hager, Valentine, Michael, Young, Steven J., Damian, Dan, Samuels-Crow, Kimberly E., Sheridan, Krystal, Fofanov, Viacheslav Y., Furstenau, Tara N., Busch, Joseph D., Erickson, Daryn E., Lancione, Ryan C., Smith, Kirk, Will, James, Townsend, John, Keim, Paul S., Engelthaler, David M.
Xuất bản năm PLoS One (2018)

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

Bằng Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Xuất bản năm PLoS One (2015)

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

Bằng Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Xuất bản năm F1000Res (2020)

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

Bằng Pearson, Talima, Sahl, Jason W., Hepp, Crystal M., Handady, Karthik, Hornstra, Heidie, Vazquez, Adam J., Settles, Erik, Mayo, Mark, Kaestli, Mirjam, Williamson, Charles H. D., Price, Erin P., Sarovich, Derek S., Cook, James M., Wolken, Spenser R., Bowen, Richard A., Tuanyok, Apichai, Foster, Jeffrey T., Drees, Kevin P., Kidd, Timothy J., Bell, Scott C., Currie, Bart J., Keim, Paul
Xuất bản năm PLoS Pathog (2020)

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

Bằng Ladner, Jason T., Larsen, Brendan B., Bowers, Jolene R., Hepp, Crystal M., Bolyen, Evan, Folkerts, Megan, Sheridan, Krystal, Pfeiffer, Ashlyn, Yaglom, Hayley, Lemmer, Darrin, Sahl, Jason W., Kaelin, Emily A., Maqsood, Rabia, Bokulich, Nicholas A., Quirk, Grace, Watts, Thomas D., Komatsu, Kenneth K., Waddell, Victor, Lim, Efrem S., Caporaso, J. Gregory, Engelthaler, David M., Worobey, Michael, Keim, Paul
Xuất bản năm mBio (2020)