Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

ανά Hepp, Crystal M.
Τόπος έκδοσης mSystems (2019)

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction

ανά Sookdeo, Akash, Hepp, Crystal M., Boissinot, Stéphane
Τόπος έκδοσης Mob DNA (2018)

Revisiting the evolution of mouse LINE-1 in the genomic era

ανά Sookdeo, Akash, Hepp, Crystal M, McClure, Marcella A, Boissinot, Stéphane
Έκδοση 2013

Sample pooling methods for efficient pathogen screening: Practical implications

ανά Furstenau, Tara N., Cocking, Jill H., Hepp, Crystal M., Fofanov, Viacheslav Y.
Τόπος έκδοσης PLoS One (2020)

Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi

ανά Sumampow, Thalita Christiani Pingkan, Shekelle, Myron, Beier, Paul, Walker, Faith M., Hepp, Crystal M.
Τόπος έκδοσης PLoS One (2020)

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

ανά Kaufman, Emily L., Stone, Nathan E., Scoles, Glen A., Hepp, Crystal M., Busch, Joseph D., Wagner, David M.
Τόπος έκδοσης Parasit Vectors (2018)

Characterization of neonatal opioid withdrawal syndrome in Arizona from 2010-2017

ανά Eaves, Emery R., Barber, Jarrett, Whealy, Ryann, Clancey, Sara A., Wright, Rita, Cocking, Jill Hager, Spadafino, Joseph, Hepp, Crystal M.
Τόπος έκδοσης PLoS One (2021)

Guano exposed: Impact of aerobic conditions on bat fecal microbiota

ανά Fofanov, Viacheslav Y., Furstenau, Tara N., Sanchez, Daniel, Hepp, Crystal M., Cocking, Jill, Sobek, Colin, Pagel, Nicole, Walker, Faith, Chambers, Carol L.
Τόπος έκδοσης Ecol Evol (2018)

Health Disparities and Converging Epidemics in Jail Populations: Protocol for a Mixed-Methods Study

ανά Trotter II, Robert T, Camplain, Ricky, Eaves, Emery R, Fofanov, Viacheslav Y, Dmitrieva, Natalia O, Hepp, Crystal M, Warren, Meghan, Barrios, Brianna A, Pagel, Nicole, Mayer, Alyssa, Baldwin, Julie A
Τόπος έκδοσης JMIR Res Protoc (2018)

Health disparities in jail populations: Mixed methods and multi-disciplinary community engagement for justice and health impacts

ανά Trotter, Robert T., Fofanov, Viacheslav Y., Camplain, Ricky, Arazan, Christine L., Camplain, Carolyn, Eaves, Emery R., Hanabury, Mary, Hepp, Crystal M, Kohlbeck, Bailey S., Lininger, Monica R., Peoples, Marie, Dmitrieva, Natalia O., Baldwin, Julie A.
Τόπος έκδοσης Pract Anthropol (2019)

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague

ανά Vogler, Amy J., Andrianaivoarimanana, Voahangy, Telfer, Sandra, Hall, Carina M., Sahl, Jason W., Hepp, Crystal M., Centner, Heather, Andersen, Genevieve, Birdsell, Dawn N., Rahalison, Lila, Nottingham, Roxanne, Keim, Paul, Wagner, David M., Rajerison, Minoarisoa
Τόπος έκδοσης PLoS Negl Trop Dis (2017)

Genotyping of Burkholderia mallei from an Outbreak of Glanders in Bahrain Suggests Multiple Introduction Events

ανά Scholz, Holger C., Pearson, Talima, Hornstra, Heidie, Projahn, Michaela, Terzioglu, Rahime, Wernery, Renate, Georgi, Enrico, Riehm, Julia M., Wagner, David M., Keim, Paul S., Joseph, Marina, Johnson, Bobby, Kinne, Joerg, Jose, Shanti, Hepp, Crystal M., Witte, Angela, Wernery, Ulrich
Έκδοση 2014

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

ανά Engelthaler, David M., Roe, Chandler C., Hepp, Crystal M., Teixeira, Marcus, Driebe, Elizabeth M., Schupp, James M., Gade, Lalitha, Waddell, Victor, Komatsu, Kenneth, Arathoon, Eduardo, Logemann, Heidi, Thompson, George R., Chiller, Tom, Barker, Bridget, Keim, Paul, Litvintseva, Anastasia P.
Τόπος έκδοσης mBio (2016)

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest

ανά Roe, Chandler C., Bowers, Jolene, Oltean, Hanna, DeBess, Emilio, Dufresne, Philippe J., McBurney, Scott, Overy, David P., Wanke, Bodo, Lysen, Colleen, Chiller, Tom, Meyer, Wieland, Thompson, George R., Lockhart, Shawn R., Hepp, Crystal M., Engelthaler, David M.
Τόπος έκδοσης mSphere (2018)

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

ανά Sahl, Jason W., Lemmer, Darrin, Travis, Jason, Schupp, James M., Gillece, John D., Aziz, Maliha, Driebe, Elizabeth M., Drees, Kevin P., Hicks, Nathan D., Williamson, Charles Hall Davis, Hepp, Crystal M., Smith, David Earl, Roe, Chandler, Engelthaler, David M., Wagner, David M., Keim, Paul
Τόπος έκδοσης Microb Genom (2016)

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

ανά Hepp, Crystal M., Cocking, Jill Hager, Valentine, Michael, Young, Steven J., Damian, Dan, Samuels-Crow, Kimberly E., Sheridan, Krystal, Fofanov, Viacheslav Y., Furstenau, Tara N., Busch, Joseph D., Erickson, Daryn E., Lancione, Ryan C., Smith, Kirk, Will, James, Townsend, John, Keim, Paul S., Engelthaler, David M.
Τόπος έκδοσης PLoS One (2018)

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

ανά Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Τόπος έκδοσης PLoS One (2015)

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

ανά Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Τόπος έκδοσης F1000Res (2020)

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

ανά Pearson, Talima, Sahl, Jason W., Hepp, Crystal M., Handady, Karthik, Hornstra, Heidie, Vazquez, Adam J., Settles, Erik, Mayo, Mark, Kaestli, Mirjam, Williamson, Charles H. D., Price, Erin P., Sarovich, Derek S., Cook, James M., Wolken, Spenser R., Bowen, Richard A., Tuanyok, Apichai, Foster, Jeffrey T., Drees, Kevin P., Kidd, Timothy J., Bell, Scott C., Currie, Bart J., Keim, Paul
Τόπος έκδοσης PLoS Pathog (2020)

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

ανά Ladner, Jason T., Larsen, Brendan B., Bowers, Jolene R., Hepp, Crystal M., Bolyen, Evan, Folkerts, Megan, Sheridan, Krystal, Pfeiffer, Ashlyn, Yaglom, Hayley, Lemmer, Darrin, Sahl, Jason W., Kaelin, Emily A., Maqsood, Rabia, Bokulich, Nicholas A., Quirk, Grace, Watts, Thomas D., Komatsu, Kenneth K., Waddell, Victor, Lim, Efrem S., Caporaso, J. Gregory, Engelthaler, David M., Worobey, Michael, Keim, Paul
Τόπος έκδοσης mBio (2020)