Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

অনুযায়ী Hepp, Crystal M.
প্রকাশিত mSystems (2019)

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction

অনুযায়ী Sookdeo, Akash, Hepp, Crystal M., Boissinot, Stéphane
প্রকাশিত Mob DNA (2018)

Revisiting the evolution of mouse LINE-1 in the genomic era

অনুযায়ী Sookdeo, Akash, Hepp, Crystal M, McClure, Marcella A, Boissinot, Stéphane
প্রকাশিত 2013

Sample pooling methods for efficient pathogen screening: Practical implications

অনুযায়ী Furstenau, Tara N., Cocking, Jill H., Hepp, Crystal M., Fofanov, Viacheslav Y.
প্রকাশিত PLoS One (2020)

Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi

অনুযায়ী Sumampow, Thalita Christiani Pingkan, Shekelle, Myron, Beier, Paul, Walker, Faith M., Hepp, Crystal M.
প্রকাশিত PLoS One (2020)

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

অনুযায়ী Kaufman, Emily L., Stone, Nathan E., Scoles, Glen A., Hepp, Crystal M., Busch, Joseph D., Wagner, David M.
প্রকাশিত Parasit Vectors (2018)

Characterization of neonatal opioid withdrawal syndrome in Arizona from 2010-2017

অনুযায়ী Eaves, Emery R., Barber, Jarrett, Whealy, Ryann, Clancey, Sara A., Wright, Rita, Cocking, Jill Hager, Spadafino, Joseph, Hepp, Crystal M.
প্রকাশিত PLoS One (2021)

Guano exposed: Impact of aerobic conditions on bat fecal microbiota

অনুযায়ী Fofanov, Viacheslav Y., Furstenau, Tara N., Sanchez, Daniel, Hepp, Crystal M., Cocking, Jill, Sobek, Colin, Pagel, Nicole, Walker, Faith, Chambers, Carol L.
প্রকাশিত Ecol Evol (2018)

Health Disparities and Converging Epidemics in Jail Populations: Protocol for a Mixed-Methods Study

অনুযায়ী Trotter II, Robert T, Camplain, Ricky, Eaves, Emery R, Fofanov, Viacheslav Y, Dmitrieva, Natalia O, Hepp, Crystal M, Warren, Meghan, Barrios, Brianna A, Pagel, Nicole, Mayer, Alyssa, Baldwin, Julie A
প্রকাশিত JMIR Res Protoc (2018)

Health disparities in jail populations: Mixed methods and multi-disciplinary community engagement for justice and health impacts

অনুযায়ী Trotter, Robert T., Fofanov, Viacheslav Y., Camplain, Ricky, Arazan, Christine L., Camplain, Carolyn, Eaves, Emery R., Hanabury, Mary, Hepp, Crystal M, Kohlbeck, Bailey S., Lininger, Monica R., Peoples, Marie, Dmitrieva, Natalia O., Baldwin, Julie A.
প্রকাশিত Pract Anthropol (2019)

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague

অনুযায়ী Vogler, Amy J., Andrianaivoarimanana, Voahangy, Telfer, Sandra, Hall, Carina M., Sahl, Jason W., Hepp, Crystal M., Centner, Heather, Andersen, Genevieve, Birdsell, Dawn N., Rahalison, Lila, Nottingham, Roxanne, Keim, Paul, Wagner, David M., Rajerison, Minoarisoa
প্রকাশিত PLoS Negl Trop Dis (2017)

Genotyping of Burkholderia mallei from an Outbreak of Glanders in Bahrain Suggests Multiple Introduction Events

অনুযায়ী Scholz, Holger C., Pearson, Talima, Hornstra, Heidie, Projahn, Michaela, Terzioglu, Rahime, Wernery, Renate, Georgi, Enrico, Riehm, Julia M., Wagner, David M., Keim, Paul S., Joseph, Marina, Johnson, Bobby, Kinne, Joerg, Jose, Shanti, Hepp, Crystal M., Witte, Angela, Wernery, Ulrich
প্রকাশিত 2014

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

অনুযায়ী Engelthaler, David M., Roe, Chandler C., Hepp, Crystal M., Teixeira, Marcus, Driebe, Elizabeth M., Schupp, James M., Gade, Lalitha, Waddell, Victor, Komatsu, Kenneth, Arathoon, Eduardo, Logemann, Heidi, Thompson, George R., Chiller, Tom, Barker, Bridget, Keim, Paul, Litvintseva, Anastasia P.
প্রকাশিত mBio (2016)

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest

অনুযায়ী Roe, Chandler C., Bowers, Jolene, Oltean, Hanna, DeBess, Emilio, Dufresne, Philippe J., McBurney, Scott, Overy, David P., Wanke, Bodo, Lysen, Colleen, Chiller, Tom, Meyer, Wieland, Thompson, George R., Lockhart, Shawn R., Hepp, Crystal M., Engelthaler, David M.
প্রকাশিত mSphere (2018)

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

অনুযায়ী Sahl, Jason W., Lemmer, Darrin, Travis, Jason, Schupp, James M., Gillece, John D., Aziz, Maliha, Driebe, Elizabeth M., Drees, Kevin P., Hicks, Nathan D., Williamson, Charles Hall Davis, Hepp, Crystal M., Smith, David Earl, Roe, Chandler, Engelthaler, David M., Wagner, David M., Keim, Paul
প্রকাশিত Microb Genom (2016)

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

অনুযায়ী Hepp, Crystal M., Cocking, Jill Hager, Valentine, Michael, Young, Steven J., Damian, Dan, Samuels-Crow, Kimberly E., Sheridan, Krystal, Fofanov, Viacheslav Y., Furstenau, Tara N., Busch, Joseph D., Erickson, Daryn E., Lancione, Ryan C., Smith, Kirk, Will, James, Townsend, John, Keim, Paul S., Engelthaler, David M.
প্রকাশিত PLoS One (2018)

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

অনুযায়ী Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
প্রকাশিত PLoS One (2015)

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

অনুযায়ী Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
প্রকাশিত F1000Res (2020)

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

অনুযায়ী Pearson, Talima, Sahl, Jason W., Hepp, Crystal M., Handady, Karthik, Hornstra, Heidie, Vazquez, Adam J., Settles, Erik, Mayo, Mark, Kaestli, Mirjam, Williamson, Charles H. D., Price, Erin P., Sarovich, Derek S., Cook, James M., Wolken, Spenser R., Bowen, Richard A., Tuanyok, Apichai, Foster, Jeffrey T., Drees, Kevin P., Kidd, Timothy J., Bell, Scott C., Currie, Bart J., Keim, Paul
প্রকাশিত PLoS Pathog (2020)

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

অনুযায়ী Ladner, Jason T., Larsen, Brendan B., Bowers, Jolene R., Hepp, Crystal M., Bolyen, Evan, Folkerts, Megan, Sheridan, Krystal, Pfeiffer, Ashlyn, Yaglom, Hayley, Lemmer, Darrin, Sahl, Jason W., Kaelin, Emily A., Maqsood, Rabia, Bokulich, Nicholas A., Quirk, Grace, Watts, Thomas D., Komatsu, Kenneth K., Waddell, Victor, Lim, Efrem S., Caporaso, J. Gregory, Engelthaler, David M., Worobey, Michael, Keim, Paul
প্রকাশিত mBio (2020)