Sequence variation in the coding region of the melanocortin-1 receptor gene (MC1R) is not associated with plumage variation in the blue-crowned manakin (Lepidothrix coronata)

od Cheviron, Z.A, Hackett, Shannon J, Brumfield, Robb T
Wydane 2006

The phylogenetic affinities of Crossley's babbler (Mystacornis crossleyi): adding a new niche to the vanga radiation of Madagascar

od Johansson, Ulf S., Bowie, Rauri C.K., Hackett, Shannon J., Schulenberg, Thomas S.
Wydane 2008

Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites

od Block, Nicholas L, Goodman, Steven M, Hackett, Shannon J, Bates, John M, Raherilalao, Marie J
Wydane w Ecol Evol (2015)

Parasite Prevalence Corresponds to Host Life History in a Diverse Assemblage of Afrotropical Birds and Haemosporidian Parasites

od Lutz, Holly L., Hochachka, Wesley M., Engel, Joshua I., Bell, Jeffrey A., Tkach, Vasyl V., Bates, John M., Hackett, Shannon J., Weckstein, Jason D.
Wydane w PLoS One (2015)

Correction: Parasite Prevalence Corresponds to Host Life History in a Diverse Assemblage of Afrotropical Birds and Haemosporidian Parasites

od Lutz, Holly L., Hochachka, Wesley M., Engel, Joshua I., Bell, Jeffrey A., Tkach, Vasyl V., Bates, John M., Hackett, Shannon J., Weckstein, Jason D.
Wydane w PLoS One (2015)

Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals

od Yuri, Tamaki, Kimball, Rebecca T., Harshman, John, Bowie, Rauri C. K., Braun, Michael J., Chojnowski, Jena L., Han, Kin-Lan, Hackett, Shannon J., Huddleston, Christopher J., Moore, William S., Reddy, Sushma, Sheldon, Frederick H., Steadman, David W., Witt, Christopher C., Braun, Edward L.
Wydane 2013

Contrasting drivers of diversity in hosts and parasites across the tropical Andes

od McNew, Sabrina M., Barrow, Lisa N., Williamson, Jessie L., Galen, Spencer C., Skeen, Heather R., DuBay, Shane G., Gaffney, Ariel M., Johnson, Andrew B., Bautista, Emil, Ordoñez, Paloma, Schmitt, C. Jonathan, Smiley, Ashley, Valqui, Thomas, Bates, John M., Hackett, Shannon J., Witt, Christopher C.
Wydane w Proc Natl Acad Sci U S A (2021)

Phylogenomic evidence for multiple losses of flight in ratite birds

od Harshman, John, Braun, Edward L., Braun, Michael J., Huddleston, Christopher J., Bowie, Rauri C. K., Chojnowski, Jena L., Hackett, Shannon J., Han, Kin-Lan, Kimball, Rebecca T., Marks, Ben D., Miglia, Kathleen J., Moore, William S., Reddy, Sushma, Sheldon, Frederick H., Steadman, David W., Steppan, Scott J., Witt, Christopher C., Yuri, Tamaki
Wydane 2008

Homoplastic microinversions and the avian tree of life

od Braun, Edward L, Kimball, Rebecca T, Han, Kin-Lan, Iuhasz-Velez, Naomi R, Bonilla, Amber J, Chojnowski, Jena L, Smith, Jordan V, Bowie, Rauri CK, Braun, Michael J, Hackett, Shannon J, Harshman, John, Huddleston, Christopher J, Marks, Ben D, Miglia, Kathleen J, Moore, William S, Reddy, Sushma, Sheldon, Frederick H, Witt, Christopher C, Yuri, Tamaki
Wydane 2011

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

od Song, Se Jin, Sanders, Jon G., Delsuc, Frédéric, Metcalf, Jessica, Amato, Katherine, Taylor, Michael W., Mazel, Florent, Lutz, Holly L., Winker, Kevin, Graves, Gary R., Humphrey, Gregory, Gilbert, Jack A., Hackett, Shannon J., White, Kevin P., Skeen, Heather R., Kurtis, Sarah M., Withrow, Jack, Braile, Thomas, Miller, Matthew, McCracken, Kevin G., Maley, James M., Ezenwa, Vanessa O., Williams, Allison, Blanton, Jessica M., McKenzie, Valerie J., Knight, Rob
Wydane w mBio (2020)

Dense sampling of bird diversity increases power of comparative genomics

od Feng, Shaohong, Stiller, Josefin, Deng, Yuan, Armstrong, Joel, Fang, Qi, Reeve, Andrew Hart, Xie, Duo, Chen, Guangji, Guo, Chunxue, Faircloth, Brant C., Petersen, Bent, Wang, Zongji, Zhou, Qi, Diekhans, Mark, Chen, Wanjun, Andreu-Sánchez, Sergio, Margaryan, Ashot, Howard, Jason Travis, Parent, Carole, Pacheco, George, Sinding, Mikkel-Holger S., Puetz, Lara, Cavill, Emily, Ribeiro, Ângela M., Eckhart, Leopold, Fjeldså, Jon, Hosner, Peter A., Brumfield, Robb T., Christidis, Les, Bertelsen, Mads F., Sicheritz-Ponten, Thomas, Tietze, Dieter Thomas, Robertson, Bruce C., Song, Gang, Borgia, Gerald, Claramunt, Santiago, Lovette, Irby J., Cowen, Saul J., Njoroge, Peter, Dumbacher, John Philip, Ryder, Oliver A., Fuchs, Jérôme, Bunce, Michael, Burt, David W., Cracraft, Joel, Meng, Guanliang, Hackett, Shannon J., Ryan, Peter G., Jønsson, Knud Andreas, Jamieson, Ian G., da Fonseca, Rute R., Braun, Edward L., Houde, Peter, Mirarab, Siavash, Suh, Alexander, Hansson, Bengt, Ponnikas, Suvi, Sigeman, Hanna, Stervander, Martin, Frandsen, Paul B., van der Zwan, Henriette, van der Sluis, Rencia, Visser, Carina, Balakrishnan, Christopher N., Clark, Andrew G., Fitzpatrick, John W., Bowman, Reed, Chen, Nancy, Cloutier, Alison, Sackton, Timothy B., Edwards, Scott V., Foote, Dustin J., Shakya, Subir B., Sheldon, Frederick H., Vignal, Alain, Soares, André E. R., Shapiro, Beth, González-Solís, Jacob, Ferrer-Obiol, Joan, Rozas, Julio, Riutort, Marta, Tigano, Anna, Friesen, Vicki, Dalén, Love, Urrutia, Araxi O., Székely, Tamás, Liu, Yang, Campana, Michael G., Corvelo, André, Fleischer, Robert C., Rutherford, Kim M., Gemmell, Neil J., Dussex, Nicolas, Mouritsen, Henrik, Thiele, Nadine, Delmore, Kira, Liedvogel, Miriam, Franke, Andre, Hoeppner, Marc P., Krone, Oliver, Fudickar, Adam M., Milá, Borja, Ketterson, Ellen D., Fidler, Andrew Eric, Friis, Guillermo, Parody-Merino, Ángela M., Battley, Phil F., Cox, Murray P., Lima, Nicholas Costa Barroso, Prosdocimi, Francisco, Parchman, Thomas Lee, Schlinger, Barney A., Loiselle, Bette A., Blake, John G., Lim, Haw Chuan, Day, Lainy B., Fuxjager, Matthew J., Baldwin, Maude W., Braun, Michael J., Wirthlin, Morgan, Dikow, Rebecca B., Ryder, T. Brandt, Camenisch, Glauco, Keller, Lukas F., DaCosta, Jeffrey M., Hauber, Mark E., Louder, Matthew I. M., Witt, Christopher C., McGuire, Jimmy A., Mudge, Joann, Megna, Libby C., Carling, Matthew D., Wang, Biao, Taylor, Scott A., Del-Rio, Glaucia, Aleixo, Alexandre, Vasconcelos, Ana Tereza Ribeiro, Mello, Claudio V., Weir, Jason T., Haussler, David, Li, Qiye, Yang, Huanming, Wang, Jian, Lei, Fumin, Rahbek, Carsten, Gilbert, M. Thomas P., Graves, Gary R., Jarvis, Erich D., Paten, Benedict, Zhang, Guojie
Wydane w Nature (2020)

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

od Feng, Shaohong, Stiller, Josefin, Deng, Yuan, Armstrong, Joel, Fang, Qi, Reeve, Andrew Hart, Xie, Duo, Chen, Guangji, Guo, Chunxue, Faircloth, Brant C., Petersen, Bent, Wang, Zongji, Zhou, Qi, Diekhans, Mark, Chen, Wanjun, Andreu-Sánchez, Sergio, Margaryan, Ashot, Howard, Jason Travis, Parent, Carole, Pacheco, George, Sinding, Mikkel-Holger S., Puetz, Lara, Cavill, Emily, Ribeiro, Ângela M., Eckhart, Leopold, Fjeldså, Jon, Hosner, Peter A., Brumfield, Robb T., Christidis, Les, Bertelsen, Mads F., Sicheritz-Ponten, Thomas, Tietze, Dieter Thomas, Robertson, Bruce C., Song, Gang, Borgia, Gerald, Claramunt, Santiago, Lovette, Irby J., Cowen, Saul J., Njoroge, Peter, Dumbacher, John Philip, Ryder, Oliver A., Fuchs, Jérôme, Bunce, Michael, Burt, David W., Cracraft, Joel, Meng, Guanliang, Hackett, Shannon J., Ryan, Peter G., Jønsson, Knud Andreas, Jamieson, Ian G., da Fonseca, Rute R., Braun, Edward L., Houde, Peter, Mirarab, Siavash, Suh, Alexander, Hansson, Bengt, Ponnikas, Suvi, Sigeman, Hanna, Stervander, Martin, Frandsen, Paul B., van der Zwan, Henriette, van der Sluis, Rencia, Visser, Carina, Balakrishnan, Christopher N., Clark, Andrew G., Fitzpatrick, John W., Bowman, Reed, Chen, Nancy, Cloutier, Alison, Sackton, Timothy B., Edwards, Scott V., Foote, Dustin J., Shakya, Subir B., Sheldon, Frederick H., Vignal, Alain, Soares, André E. R., Shapiro, Beth, González-Solís, Jacob, Ferrer-Obiol, Joan, Rozas, Julio, Riutort, Marta, Tigano, Anna, Friesen, Vicki, Dalén, Love, Urrutia, Araxi O., Székely, Tamás, Liu, Yang, Campana, Michael G., Corvelo, André, Fleischer, Robert C., Rutherford, Kim M., Gemmell, Neil J., Dussex, Nicolas, Mouritsen, Henrik, Thiele, Nadine, Delmore, Kira, Liedvogel, Miriam, Franke, Andre, Hoeppner, Marc P., Krone, Oliver, Fudickar, Adam M., Milá, Borja, Ketterson, Ellen D., Fidler, Andrew Eric, Friis, Guillermo, Parody-Merino, Ángela M., Battley, Phil F., Cox, Murray P., Lima, Nicholas Costa Barroso, Prosdocimi, Francisco, Parchman, Thomas Lee, Schlinger, Barney A., Loiselle, Bette A., Blake, John G., Lim, Haw Chuan, Day, Lainy B., Fuxjager, Matthew J., Baldwin, Maude W., Braun, Michael J., Wirthlin, Morgan, Dikow, Rebecca B., Ryder, T. Brandt, Camenisch, Glauco, Keller, Lukas F., DaCosta, Jeffrey M., Hauber, Mark E., Louder, Matthew I. M., Witt, Christopher C., McGuire, Jimmy A., Mudge, Joann, Megna, Libby C., Carling, Matthew D., Wang, Biao, Taylor, Scott A., Del-Rio, Glaucia, Aleixo, Alexandre, Vasconcelos, Ana Tereza Ribeiro, Mello, Claudio V., Weir, Jason T., Haussler, David, Li, Qiye, Yang, Huanming, Wang, Jian, Lei, Fumin, Rahbek, Carsten, Gilbert, M. Thomas P., Graves, Gary R., Jarvis, Erich D., Paten, Benedict, Zhang, Guojie
Wydane w Nature (2021)