Bioinformatics of genome evolution: from ancestral to modern metabolism

Por Fondi, Marco
Publicado no Premio Tesi di Dottorato (2011)

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes

Por Fondi, Marco, Brilli, Matteo, Fani, Renato
Publicado em 2007

The mosaicism of plasmids revealed by atypical genes detection and analysis

Por Bosi, Emanuele, Fani, Renato, Fondi, Marco
Publicado em 2011

The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case

Por Fani, Renato, Brilli, Matteo, Fondi, Marco, Lió, Pietro
Publicado em 2007

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

Por Emiliani, Giovanni, Fondi, Marco, Fani, Renato, Gribaldo, Simonetta
Publicado em 2009

The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis

Por Fondi, Marco, Brilli, Matteo, Emiliani, Giovanni, Paffetti, Donatella, Fani, Renato
Publicado em 2007

Modelling microbial metabolic rewiring during growth in a complex medium

Por Fondi, Marco, Bosi, Emanuele, Presta, Luana, Natoli, Diletta, Fani, Renato
Publicado no BMC Genomics (2016)

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

Por Brilli, Matteo, Mengoni, Alessio, Fondi, Marco, Bazzicalupo, Marco, Liò, Pietro, Fani, Renato
Publicado em 2008

Network Analysis of Plasmidomes: The Azospirillum brasilense Sp245 Case

Por Orlandini, Valerio, Emiliani, Giovanni, Fondi, Marco, Maida, Isabel, Perrin, Elena, Fani, Renato
Publicado no Int J Evol Biol (2014)

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

Por Brilli, Matteo, Fondi, Marco, Fani, Renato, Mengoni, Alessio, Ferri, Lorenzo, Bazzicalupo, Marco, Biondi, Emanuele G
Publicado em 2010

Analysis of a Pool of Small Plasmids from Soil Heterotrophic Cultivable Bacterial Communities

Por Papaleo, Maria Cristiana, Fondi, Marco, Maida, Isabel, Perrin, Elena, Bevivino, Annamaria, Dalmastri, Claudia, Fani, Renato
Publicado no Open Microbiol J (2015)

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity

Por Bosi, Emanuele, Monk, Jonathan M., Aziz, Ramy K., Fondi, Marco, Nizet, Victor, Palsson, Bernhard Ø.
Publicado no Proc Natl Acad Sci U S A (2016)

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

Por Fondi, Marco, Bacci, Giovanni, Brilli, Matteo, Papaleo, Maria Cristiana, Mengoni, Alessio, Vaneechoutte, Mario, Dijkshoorn, Lenie, Fani, Renato
Publicado em 2010

Exploring the HME and HAE1 efflux systems in the genus Burkholderia

Por Perrin, Elena, Fondi, Marco, Papaleo, Maria Cristiana, Maida, Isabel, Buroni, Silvia, Pasca, Maria Rosalia, Riccardi, Giovanna, Fani, Renato
Publicado em 2010

Draft Genome Sequence of the Hydrocarbon-Degrading and Emulsan-Producing Strain Acinetobacter venetianus RAG-1(T)

Por Fondi, Marco, Orlandini, Valerio, Emiliani, Giovanni, Papaleo, Maria Cristiana, Maida, Isabel, Perrin, Elena, Vaneechoutte, Mario, Dijkshoorn, Lenie, Fani, Renato
Publicado em 2012

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

Por Fondi, Marco, Karkman, Antti, Tamminen, Manu V., Bosi, Emanuele, Virta, Marko, Fani, Renato, Alm, Eric, McInerney, James O.
Publicado no Genome Biol Evol (2016)

Mechanism of Resistance to an Antitubercular 2-Thiopyridine Derivative That Is Also Active against Burkholderia cenocepacia

Por Scoffone, Viola C., Spadaro, Francesca, Udine, Claudia, Makarov, Vadim, Fondi, Marco, Fani, Renato, De Rossi, Edda, Riccardi, Giovanna, Buroni, Silvia
Publicado em 2014

Acquisition and Evolution of SXT-R391 Integrative Conjugative Elements in the Seventh-Pandemic Vibrio cholerae Lineage

Por Spagnoletti, Matteo, Ceccarelli, Daniela, Rieux, Adrien, Fondi, Marco, Taviani, Elisa, Fani, Renato, Colombo, Mauro M., Colwell, Rita R., Balloux, François
Publicado em 2014

Draft Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759

Por Maida, Isabel, Bosi, Emanuele, Perrin, Elena, Papaleo, Maria Cristiana, Orlandini, Valerio, Fondi, Marco, Fani, Renato, Wiegel, Juergen, Bianconi, Giovanna, Canganella, Francesco
Publicado em 2013

Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti

Por diCenzo, George C., Checcucci, Alice, Bazzicalupo, Marco, Mengoni, Alessio, Viti, Carlo, Dziewit, Lukasz, Finan, Turlough M., Galardini, Marco, Fondi, Marco
Publicado no Nat Commun (2016)