USING BIOBIN TO EXPLORE RARE VARIANT POPULATION STRATIFICATION

Por Moore, Carrie B., Wallace, John R., Frase, Alex T., Pendergrass, Sarah A., Ritchie, Marylyn D.
Publicado em 2013

BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge

Por Moore, Carrie B, Wallace, John R, Frase, Alex T, Pendergrass, Sarah A, Ritchie, Marylyn D
Publicado em 2013

ATHENA: the analysis tool for heritable and environmental network associations

Por Holzinger, Emily R., Dudek, Scott M., Frase, Alex T., Pendergrass, Sarah A., Ritchie, Marylyn D.
Publicado em 2014

Knowledge-driven genomic interactions: an application in ovarian cancer

Por Kim, Dokyoon, Li, Ruowang, Dudek, Scott M, Frase, Alex T, Pendergrass, Sarah A, Ritchie, Marylyn D
Publicado em 2014

Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development

Por Pendergrass, Sarah A, Frase, Alex, Wallace, John, Wolfe, Daniel, Katiyar, Neerja, Moore, Carrie, Ritchie, Marylyn D
Publicado em 2013

ATHENA: A TOOL FOR META-DIMENSIONAL ANALYSIS APPLIED TO GENOTYPES AND GENE EXPRESSION DATA TO PREDICT HDL CHOLESTEROL LEVELS

Por HOLZINGER, EMILY R., DUDEK, SCOTT M., FRASE, ALEX T., KRAUSS, RONALD M., MEDINA, MARISA W., RITCHIE, MARYLYN D.
Publicado em 2013

PHENOME-WIDE INTERACTION STUDY (PheWIS) IN AIDS CLINICAL TRIALS GROUP DATA (ACTG)

Por Verma, Shefali S., Frase, Alex T., Verma, Anurag, Pendergrass, Sarah A., Mahony, Shaun, Haas, David W., Ritchie, Marylyn D.
Publicado no Pac Symp Biocomput (2016)

A biologically informed method for detecting rare variant associations

Por Moore, Carrie Colleen Buchanan, Basile, Anna Okula, Wallace, John Robert, Frase, Alex Thomas, Ritchie, Marylyn DeRiggi
Publicado no BioData Min (2016)

Low Frequency Variants, Collapsed Based on Biological Knowledge, Uncover Complexity of Population Stratification in 1000 Genomes Project Data

Por Moore, Carrie B., Wallace, John R., Wolfe, Daniel J., Frase, Alex T., Pendergrass, Sarah A., Weiss, Kenneth M., Ritchie, Marylyn D.
Publicado em 2013

Pathway analysis by randomization incorporating structure—PARIS: an update

Por Butkiewicz, Mariusz, Cooke Bailey, Jessica N., Frase, Alex, Dudek, Scott, Yaspan, Brian L., Ritchie, Marylyn D., Pendergrass, Sarah A., Haines, Jonathan L.
Publicado no Bioinformatics (2016)

BIOFILTER AS A FUNCTIONAL ANNOTATION PIPELINE FOR COMMON AND RARE COPY NUMBER BURDEN

Por KIM, DOKYOON, LUCAS, ANASTASIA, GLESSNER, JOSEPH, VERMA, SHEFALI S., BRADFORD, YUKI, LI, RUOWANG, FRASE, ALEX T., HAKONARSON, HAKON, PEISSIG, PEGGY, BRILLIANT, MURRAY, RITCHIE, MARYLYN D.
Publicado no Pac Symp Biocomput (2016)

INTEGRATING CLINICAL LABORATORY MEASURES AND ICD-9 CODE DIAGNOSES IN PHENOME-WIDE ASSOCIATION STUDIES

Por Verma, Anurag, Leader, Joseph B., Verma, Shefali S., Frase, Alex, Wallace, John, Dudek, Scott, Lavage, Daniel R., Van Hout, Cristopher V., Dewey, Frederick E., Penn, John, Lopez, Alex, Overton, John D., Carey, David J., Ledbetter, David H., Kirchner, H. Lester, Ritchie, Marylyn D., Pendergrass, Sarah A.
Publicado no Pac Symp Biocomput (2016)

Phenome-Wide Association Study (PheWAS) for Detection of Pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network

Por Pendergrass, Sarah A., Brown-Gentry, Kristin, Dudek, Scott, Frase, Alex, Torstenson, Eric S., Goodloe, Robert, Ambite, Jose Luis, Avery, Christy L., Buyske, Steve, Bůžková, Petra, Deelman, Ewa, Fesinmeyer, Megan D., Haiman, Christopher A., Heiss, Gerardo, Hindorff, Lucia A., Hsu, Chu-Nan, Jackson, Rebecca D., Kooperberg, Charles, Le Marchand, Loic, Lin, Yi, Matise, Tara C., Monroe, Kristine R., Moreland, Larry, Park, Sungshim L., Reiner, Alex, Wallace, Robert, Wilkens, Lynn R., Crawford, Dana C., Ritchie, Marylyn D.
Publicado em 2013

A phenome-wide association study (PheWAS) in the Population Architecture using Genomics and Epidemiology (PAGE) study reveals potential pleiotropy in African Americans

Por Pendergrass, Sarah A., Buyske, Steven, Jeff, Janina M., Frase, Alex, Dudek, Scott, Bradford, Yuki, Ambite, Jose-Luis, Avery, Christy L., Buzkova, Petra, Deelman, Ewa, Fesinmeyer, Megan D., Haiman, Christopher, Heiss, Gerardo, Hindorff, Lucia A., Hsu, Chun-Nan, Jackson, Rebecca D., Lin, Yi, Le Marchand, Loic, Matise, Tara C., Monroe, Kristine R., Moreland, Larry, North, Kari E., Park, Sungshim L., Reiner, Alex, Wallace, Robert, Wilkens, Lynne R., Kooperberg, Charles, Ritchie, Marylyn D., Crawford, Dana C.
Publicado no PLoS One (2019)