Recombination Difference between Sexes: A Role for Haploid Selection

Por Lenormand, Thomas, Dutheil, Julien
Publicado em 2005

Detecting groups of coevolving positions in a molecule: a clustering approach

Por Dutheil, Julien, Galtier, Nicolas
Publicado em 2007

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

Por Dutheil, Julien, Boussau, Bastien
Publicado em 2008

Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off

Por Dutheil, Julien Y, Figuet, Emeric
Publicado no BMC Bioinformatics (2015)

MafFilter: a highly flexible and extensible multiple genome alignment files processor

Por Dutheil, Julien Y, Gaillard, Sylvain, Stukenbrock, Eva H
Publicado em 2014

A fine-scale recombination map of the human–chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion

Por Munch, Kasper, Mailund, Thomas, Dutheil, Julien Y., Schierup, Mikkel Heide
Publicado em 2014

hotspot: software to support sperm-typing for investigating recombination hotspots

Por Odenthal-Hesse, Linda, Dutheil, Julien Y., Klötzl, Fabian, Haubold, Bernhard
Publicado no Bioinformatics (2016)

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

Por Hobolth, Asger, Dutheil, Julien Y., Hawks, John, Schierup, Mikkel H., Mailund, Thomas
Publicado em 2011

Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model

Por Mailund, Thomas, Dutheil, Julien Y., Hobolth, Asger, Lunter, Gerton, Schierup, Mikkel H.
Publicado em 2011

Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation

Por Corbi, Jonathan, Dutheil, Julien Y., Damerval, Catherine, Tenaillon, Maud I., Manicacci, Domenica
Publicado em 2012

Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence

Por Dutheil, Julien Y., Munch, Kasper, Nam, Kiwoong, Mailund, Thomas, Schierup, Mikkel H.
Publicado no PLoS Genet (2015)

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

Por Dutheil, Julien, Gaillard, Sylvain, Bazin, Eric, Glémin, Sylvain, Ranwez, Vincent, Galtier, Nicolas, Belkhir, Khalid
Publicado em 2006

Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes

Por Penn, Osnat, Stern, Adi, Rubinstein, Nimrod D., Dutheil, Julien, Bacharach, Eran, Galtier, Nicolas, Pupko, Tal
Publicado em 2008

Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach

Por Dutheil, Julien Y., Ganapathy, Ganesh, Hobolth, Asger, Mailund, Thomas, Uyenoyama, Marcy K., Schierup, Mikkel H.
Publicado em 2009

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

Por Stukenbrock, Eva Holtgrewe, Christiansen, Freddy Bugge, Hansen, Troels Toftebjerg, Dutheil, Julien Yann, Schierup, Mikkel Heide
Publicado em 2012

The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis

Por Tollot, Marie, Assmann, Daniela, Becker, Christian, Altmüller, Janine, Dutheil, Julien Y., Wegner, Carl-Eric, Kahmann, Regine
Publicado no PLoS Pathog (2016)

Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping

Por Romiguier, Jonathan, Figuet, Emeric, Galtier, Nicolas, Douzery, Emmanuel J. P., Boussau, Bastien, Dutheil, Julien Y., Ranwez, Vincent
Publicado em 2012

A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi

Por Dutheil, Julien Y., Mannhaupt, Gertrud, Schweizer, Gabriel, M.K. Sieber, Christian, Münsterkötter, Martin, Güldener, Ulrich, Schirawski, Jan, Kahmann, Regine
Publicado no Genome Biol Evol (2016)

The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

Por Stukenbrock, Eva H., Bataillon, Thomas, Dutheil, Julien Y., Hansen, Troels T., Li, Ruiqiang, Zala, Marcello, McDonald, Bruce A., Wang, Jun, Schierup, Mikkel H.
Publicado em 2011

Extreme selective sweeps independently targeted the X chromosomes of the great apes

Por Nam, Kiwoong, Munch, Kasper, Hobolth, Asger, Dutheil, Julien Yann, Veeramah, Krishna R., Woerner, August E., Hammer, Michael F., Mailund, Thomas, Schierup, Mikkel Heide
Publicado no Proc Natl Acad Sci U S A (2015)