Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

Por Daniels, Noah M, Nadimpalli, Shilpa, Cowen, Lenore J
Publicado em 2012

Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways

Por Brady, Arthur, Maxwell, Kyle, Daniels, Noah, Cowen, Lenore J.
Publicado em 2009

SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone

Por Daniels, Noah M., Hosur, Raghavendra, Berger, Bonnie, Cowen, Lenore J.
Publicado em 2012

Touring Protein Space with Matt

Por Daniels, Noah M., Kumar, Anoop, Cowen, Lenore J., Menke, Matt
Publicado em 2011

Detangling PPI networks to uncover functionally meaningful clusters

Por Hall-Swan, Sarah, Crawford, Jake, Newman, Rebecca, Cowen, Lenore J.
Publicado no BMC Syst Biol (2018)

Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut

Por Leiserson, Mark D.M., Tatar, Diana, Cowen, Lenore J., Hescott, Benjamin J.
Publicado em 2011

BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis

Por Bryan, Allen W., Menke, Matthew, Cowen, Lenore J., Lindquist, Susan L., Berger, Bonnie
Publicado em 2009

Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data

Por Gallant, Andrew, Leiserson, Mark DM, Kachalov, Maxim, Cowen, Lenore J, Hescott, Benjamin J
Publicado em 2013

Compressive genomics for protein databases

Por Daniels, Noah M., Gallant, Andrew, Peng, Jian, Cowen, Lenore J., Baym, Michael, Berger, Bonnie
Publicado em 2013

STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions

Por Bryan, Allen W, O’Donnell, Charles W, Menke, Matthew, Cowen, Lenore J, Lindquist, Susan, Berger, Bonnie
Publicado em 2012

Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

Por Cao, Mengfei, Zhang, Hao, Park, Jisoo, Daniels, Noah M., Crovella, Mark E., Cowen, Lenore J., Hescott, Benjamin
Publicado em 2013

Correction: Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

Por Cao, Mengfei, Zhang, Hao, Park, Jisoo, Daniels, Noah M., Crovella, Mark E., Cowen, Lenore J., Hescott, Benjamin
Publicado em 2013

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence

Por Cao, Mengfei, Pietras, Christopher M., Feng, Xian, Doroschak, Kathryn J., Schaffner, Thomas, Park, Jisoo, Zhang, Hao, Cowen, Lenore J., Hescott, Benjamin J.
Publicado em 2014