High-throughput characterization of protein–RNA interactions

по Cook, Kate B., Hughes, Timothy R., Morris, Quaid D.
Опубликовано в: Brief Funct Genomics (2015)

RBPDB: a database of RNA-binding specificities

по Cook, Kate B., Kazan, Hilal, Zuberi, Khalid, Morris, Quaid, Hughes, Timothy R.
Опубликовано 2011

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features

по Read, David F., Cook, Kate, Lu, Yang Y., Le Roch, Karine G., Noble, William Stafford
Опубликовано в: PLoS Comput Biol (2019)

Measuring significant changes in chromatin conformation with ACCOST

по Cook, Kate B, Hristov, Borislav H, Le Roch, Karine G, Vert, Jean Philippe, Noble, William Stafford
Опубликовано в: Nucleic Acids Res (2020)

Paralogs hnRNP L and hnRNP LL Exhibit Overlapping but Distinct RNA Binding Constraints

по Smith, Sarah A., Ray, Debashish, Cook, Kate B., Mallory, Michael J., Hughes, Timothy R., Lynch, Kristen W.
Опубликовано 2013

The dynamic three-dimensional organization of the diploid yeast genome

по Kim, Seungsoo, Liachko, Ivan, Brickner, Donna G, Cook, Kate, Noble, William S, Brickner, Jason H, Shendure, Jay, Dunham, Maitreya J
Опубликовано в: eLife (2017)

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition

по Laver, John D, Li, Xiao, Ray, Debashish, Cook, Kate B, Hahn, Noah A, Nabeel-Shah, Syed, Kekis, Mariana, Luo, Hua, Marsolais, Alexander J, Fung, Karen YY, Hughes, Timothy R, Westwood, J Timothy, Sidhu, Sachdev S, Morris, Quaid, Lipshitz, Howard D, Smibert, Craig A
Опубликовано в: Genome Biol (2015)

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages

по Bunnik, Evelien M., Cook, Kate B., Varoquaux, Nelle, Batugedara, Gayani, Prudhomme, Jacques, Cort, Anthony, Shi, Lirong, Andolina, Chiara, Ross, Leila S., Brady, Declan, Fidock, David A., Nosten, Francois, Tewari, Rita, Sinnis, Photini, Ay, Ferhat, Vert, Jean-Philippe, Noble, William Stafford, Le Roch, Karine G.
Опубликовано в: Nat Commun (2018)

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

по Weirauch, Matthew T., Yang, Ally, Albu, Mihai, Cote, Atina, Montenegro-Montero, Alejandro, Drewe, Philipp, Najafabadi, Hamed S., Lambert, Samuel A., Mann, Ishminder, Cook, Kate, Zheng, Hong, Goity, Alejandra, van Bakel, Harm, Lozano, Jean-Claude, Galli, Mary, Lewsey, Mathew, Huang, Eryong, Mukherjee, Tuhin, Chen, Xiaoting, Reece-Hoyes, John S., Govindarajan, Sridhar, Shaulsky, Gad, Walhout, Albertha J.M., Bouget, François-Yves, Ratsch, Gunnar, Larrondo, Luis F., Ecker, Joseph R., Hughes, Timothy R.
Опубликовано 2014

A compendium of RNA-binding motifs for decoding gene regulation

по Ray, Debashish, Kazan, Hilal, Cook, Kate B., Weirauch, Matthew T., Najafabadi, Hamed S., Li, Xiao, Gueroussov, Serge, Albu, Mihai, Zheng, Hong, Yang, Ally, Na, Hong, Irimia, Manuel, Matzat, Leah H., Dale, Ryan K., Smith, Sarah A., Yarosh, Christopher A., Kelly, Seth M., Nabet, Behnam, Mecenas, Desirea, Li, Weimin, Laishram, Rakesh S., Qiao, Mei, Lipshitz, Howard D., Piano, Fabio, Corbett, Anita H., Carstens, Russ P., Frey, Brendan J., Anderson, Richard A., Lynch, Kristen W., Penalva, Luiz O. F., Lei, Elissa P., Fraser, Andrew G., Blencowe, Benjamin J., Morris, Quaid D., Hughes, Timothy R.
Опубликовано 2013