High-throughput characterization of protein–RNA interactions

od Cook, Kate B., Hughes, Timothy R., Morris, Quaid D.
izdano v Brief Funct Genomics (2015)

RBPDB: a database of RNA-binding specificities

od Cook, Kate B., Kazan, Hilal, Zuberi, Khalid, Morris, Quaid, Hughes, Timothy R.
Izdano 2011

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features

od Read, David F., Cook, Kate, Lu, Yang Y., Le Roch, Karine G., Noble, William Stafford
izdano v PLoS Comput Biol (2019)

Measuring significant changes in chromatin conformation with ACCOST

od Cook, Kate B, Hristov, Borislav H, Le Roch, Karine G, Vert, Jean Philippe, Noble, William Stafford
izdano v Nucleic Acids Res (2020)

Paralogs hnRNP L and hnRNP LL Exhibit Overlapping but Distinct RNA Binding Constraints

od Smith, Sarah A., Ray, Debashish, Cook, Kate B., Mallory, Michael J., Hughes, Timothy R., Lynch, Kristen W.
Izdano 2013

The dynamic three-dimensional organization of the diploid yeast genome

od Kim, Seungsoo, Liachko, Ivan, Brickner, Donna G, Cook, Kate, Noble, William S, Brickner, Jason H, Shendure, Jay, Dunham, Maitreya J
izdano v eLife (2017)

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition

od Laver, John D, Li, Xiao, Ray, Debashish, Cook, Kate B, Hahn, Noah A, Nabeel-Shah, Syed, Kekis, Mariana, Luo, Hua, Marsolais, Alexander J, Fung, Karen YY, Hughes, Timothy R, Westwood, J Timothy, Sidhu, Sachdev S, Morris, Quaid, Lipshitz, Howard D, Smibert, Craig A
izdano v Genome Biol (2015)

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages

od Bunnik, Evelien M., Cook, Kate B., Varoquaux, Nelle, Batugedara, Gayani, Prudhomme, Jacques, Cort, Anthony, Shi, Lirong, Andolina, Chiara, Ross, Leila S., Brady, Declan, Fidock, David A., Nosten, Francois, Tewari, Rita, Sinnis, Photini, Ay, Ferhat, Vert, Jean-Philippe, Noble, William Stafford, Le Roch, Karine G.
izdano v Nat Commun (2018)

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

od Weirauch, Matthew T., Yang, Ally, Albu, Mihai, Cote, Atina, Montenegro-Montero, Alejandro, Drewe, Philipp, Najafabadi, Hamed S., Lambert, Samuel A., Mann, Ishminder, Cook, Kate, Zheng, Hong, Goity, Alejandra, van Bakel, Harm, Lozano, Jean-Claude, Galli, Mary, Lewsey, Mathew, Huang, Eryong, Mukherjee, Tuhin, Chen, Xiaoting, Reece-Hoyes, John S., Govindarajan, Sridhar, Shaulsky, Gad, Walhout, Albertha J.M., Bouget, François-Yves, Ratsch, Gunnar, Larrondo, Luis F., Ecker, Joseph R., Hughes, Timothy R.
Izdano 2014

A compendium of RNA-binding motifs for decoding gene regulation

od Ray, Debashish, Kazan, Hilal, Cook, Kate B., Weirauch, Matthew T., Najafabadi, Hamed S., Li, Xiao, Gueroussov, Serge, Albu, Mihai, Zheng, Hong, Yang, Ally, Na, Hong, Irimia, Manuel, Matzat, Leah H., Dale, Ryan K., Smith, Sarah A., Yarosh, Christopher A., Kelly, Seth M., Nabet, Behnam, Mecenas, Desirea, Li, Weimin, Laishram, Rakesh S., Qiao, Mei, Lipshitz, Howard D., Piano, Fabio, Corbett, Anita H., Carstens, Russ P., Frey, Brendan J., Anderson, Richard A., Lynch, Kristen W., Penalva, Luiz O. F., Lei, Elissa P., Fraser, Andrew G., Blencowe, Benjamin J., Morris, Quaid D., Hughes, Timothy R.
Izdano 2013