High-throughput characterization of protein–RNA interactions

بواسطة Cook, Kate B., Hughes, Timothy R., Morris, Quaid D.
الحاوية / القاعدة Brief Funct Genomics (2015)

RBPDB: a database of RNA-binding specificities

بواسطة Cook, Kate B., Kazan, Hilal, Zuberi, Khalid, Morris, Quaid, Hughes, Timothy R.
منشور في 2011

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features

بواسطة Read, David F., Cook, Kate, Lu, Yang Y., Le Roch, Karine G., Noble, William Stafford
الحاوية / القاعدة PLoS Comput Biol (2019)

Measuring significant changes in chromatin conformation with ACCOST

بواسطة Cook, Kate B, Hristov, Borislav H, Le Roch, Karine G, Vert, Jean Philippe, Noble, William Stafford
الحاوية / القاعدة Nucleic Acids Res (2020)

Paralogs hnRNP L and hnRNP LL Exhibit Overlapping but Distinct RNA Binding Constraints

بواسطة Smith, Sarah A., Ray, Debashish, Cook, Kate B., Mallory, Michael J., Hughes, Timothy R., Lynch, Kristen W.
منشور في 2013

The dynamic three-dimensional organization of the diploid yeast genome

بواسطة Kim, Seungsoo, Liachko, Ivan, Brickner, Donna G, Cook, Kate, Noble, William S, Brickner, Jason H, Shendure, Jay, Dunham, Maitreya J
الحاوية / القاعدة eLife (2017)

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition

بواسطة Laver, John D, Li, Xiao, Ray, Debashish, Cook, Kate B, Hahn, Noah A, Nabeel-Shah, Syed, Kekis, Mariana, Luo, Hua, Marsolais, Alexander J, Fung, Karen YY, Hughes, Timothy R, Westwood, J Timothy, Sidhu, Sachdev S, Morris, Quaid, Lipshitz, Howard D, Smibert, Craig A
الحاوية / القاعدة Genome Biol (2015)

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages

بواسطة Bunnik, Evelien M., Cook, Kate B., Varoquaux, Nelle, Batugedara, Gayani, Prudhomme, Jacques, Cort, Anthony, Shi, Lirong, Andolina, Chiara, Ross, Leila S., Brady, Declan, Fidock, David A., Nosten, Francois, Tewari, Rita, Sinnis, Photini, Ay, Ferhat, Vert, Jean-Philippe, Noble, William Stafford, Le Roch, Karine G.
الحاوية / القاعدة Nat Commun (2018)

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

بواسطة Weirauch, Matthew T., Yang, Ally, Albu, Mihai, Cote, Atina, Montenegro-Montero, Alejandro, Drewe, Philipp, Najafabadi, Hamed S., Lambert, Samuel A., Mann, Ishminder, Cook, Kate, Zheng, Hong, Goity, Alejandra, van Bakel, Harm, Lozano, Jean-Claude, Galli, Mary, Lewsey, Mathew, Huang, Eryong, Mukherjee, Tuhin, Chen, Xiaoting, Reece-Hoyes, John S., Govindarajan, Sridhar, Shaulsky, Gad, Walhout, Albertha J.M., Bouget, François-Yves, Ratsch, Gunnar, Larrondo, Luis F., Ecker, Joseph R., Hughes, Timothy R.
منشور في 2014

A compendium of RNA-binding motifs for decoding gene regulation

بواسطة Ray, Debashish, Kazan, Hilal, Cook, Kate B., Weirauch, Matthew T., Najafabadi, Hamed S., Li, Xiao, Gueroussov, Serge, Albu, Mihai, Zheng, Hong, Yang, Ally, Na, Hong, Irimia, Manuel, Matzat, Leah H., Dale, Ryan K., Smith, Sarah A., Yarosh, Christopher A., Kelly, Seth M., Nabet, Behnam, Mecenas, Desirea, Li, Weimin, Laishram, Rakesh S., Qiao, Mei, Lipshitz, Howard D., Piano, Fabio, Corbett, Anita H., Carstens, Russ P., Frey, Brendan J., Anderson, Richard A., Lynch, Kristen W., Penalva, Luiz O. F., Lei, Elissa P., Fraser, Andrew G., Blencowe, Benjamin J., Morris, Quaid D., Hughes, Timothy R.
منشور في 2013