Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits

le Hayes, Ben J., Pryce, Jennie, Chamberlain, Amanda J., Bowman, Phil J., Goddard, Mike E.
Foilsithe 2010

Detection and validation of structural variations in bovine whole-genome sequence data

le Chen, Long, Chamberlain, Amanda J., Reich, Coralie M., Daetwyler, Hans D., Hayes, Ben J.
Foilsithe in Genet Sel Evol (2017)

Erratum to: Detection and validation of structural variations in bovine whole-genome sequence data

le Chen, Long, Chamberlain, Amanda J., Reich, Coralie M., Daetwyler, Hans D., Hayes, Ben J.
Foilsithe in Genet Sel Evol (2017)

Putative Causal Variants Are Enriched in Annotated Functional Regions From Six Bovine Tissues

le Prowse-Wilkins, Claire P., Wang, Jianghui, Xiang, Ruidong, Garner, Josie B., Goddard, Michael E., Chamberlain, Amanda J.
Foilsithe in Front Genet (2021)

A Validated Genome Wide Association Study to Breed Cattle Adapted to an Environment Altered by Climate Change

le Hayes, Ben J., Bowman, Phil J., Chamberlain, Amanda J., Savin, Keith, van Tassell, Curt P., Sonstegard, Tad S., Goddard, Mike E.
Foilsithe 2009

Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicus

le Forutan, Mehrnush, Ross, Elizabeth, Chamberlain, Amanda J., Nguyen, Loan, Mason, Brett, Moore, Stephen, Garner, Josie B., Xiang, Ruidong, Hayes, Ben J.
Foilsithe in Commun Biol (2021)

Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

le Khansefid, Majid, Pryce, Jennie E., Bolormaa, Sunduimijid, Chen, Yizhou, Millen, Catriona A., Chamberlain, Amanda J., Vander Jagt, Christy J., Goddard, Michael E.
Foilsithe in BMC Genomics (2018)

Extensive variation between tissues in allele specific expression in an outbred mammal

le Chamberlain, Amanda J., Vander Jagt, Christy J., Hayes, Benjamin J., Khansefid, Majid, Marett, Leah C., Millen, Catriona A., Nguyen, Thuy T. T., Goddard, Michael E.
Foilsithe in BMC Genomics (2015)

Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations

le Xiang, Ruidong, MacLeod, Iona M., Daetwyler, Hans D., de Jong, Gerben, O’Connor, Erin, Schrooten, Chris, Chamberlain, Amanda J., Goddard, Michael E.
Foilsithe in Nat Commun (2021)

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits

le Wang, Min, Hancock, Timothy P., Chamberlain, Amanda J., Vander Jagt, Christy J., Pryce, Jennie E., Cocks, Benjamin G., Goddard, Mike E., Hayes, Benjamin J.
Foilsithe in BMC Genomics (2018)

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions

le Kemper, Kathryn E, Reich, Coralie M, Bowman, Philip J, vander Jagt, Christy J, Chamberlain, Amanda J, Mason, Brett A, Hayes, Benjamin J, Goddard, Michael E
Foilsithe in Genet Sel Evol (2015)

Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk

le Liu, Zhiqian, Wang, Tingting, Pryce, Jennie E., MacLeod, Iona M., Hayes, Ben J., Chamberlain, Amanda J., Jagt, Christy Vander, Reich, Coralie M., Mason, Brett A., Rochfort, Simone, Cocks, Benjamin G.
Foilsithe in Sci Rep (2019)

Survey of allele specific expression in bovine muscle

le Guillocheau, Gabriel M., El Hou, Abdelmajid, Meersseman, Cédric, Esquerré, Diane, Rebours, Emmanuelle, Letaief, Rabia, Simao, Morgane, Hypolite, Nicolas, Bourneuf, Emmanuelle, Bruneau, Nicolas, Vaiman, Anne, Vander Jagt, Christy J., Chamberlain, Amanda J., Rocha, Dominique
Foilsithe in Sci Rep (2019)

Analyses of inter-individual variations of sperm DNA methylation and their potential implications in cattle

le Liu, Shuli, Fang, Lingzhao, Zhou, Yang, Santos, Daniel J.A., Xiang, Ruidong, Daetwyler, Hans D., Chamberlain, Amanda J., Cole, John B., Li, Cong-jun, Yu, Ying, Ma, Li, Zhang, Shengli, Liu, George E.
Foilsithe in BMC Genomics (2019)

Accuracy of imputation to whole-genome sequence in sheep

le Bolormaa, Sunduimijid, Chamberlain, Amanda J., Khansefid, Majid, Stothard, Paul, Swan, Andrew A., Mason, Brett, Prowse-Wilkins, Claire P., Duijvesteijn, Naomi, Moghaddar, Nasir, van der Werf, Julius H., Daetwyler, Hans D., MacLeod, Iona M.
Foilsithe in Genet Sel Evol (2019)

Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle

le Dorji, Jigme, Vander Jagt, Christy J., Garner, Josie B., Marett, Leah C., Mason, Brett A., Reich, Coralie M., Xiang, Ruidong, Clark, Emily L., Cocks, Benjamin G., Chamberlain, Amanda J., MacLeod, Iona M., Daetwyler, Hans D.
Foilsithe in BMC Genomics (2020)

Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits

le Yuan, Zehu, Sunduimijid, Bolormaa, Xiang, Ruidong, Behrendt, Ralph, Knight, Matthew I., Mason, Brett A., Reich, Coralie M., Prowse-Wilkins, Claire, Vander Jagt, Christy J., Chamberlain, Amanda J., MacLeod, Iona M., Li, Fadi, Yue, Xiangpeng, Daetwyler, Hans D.
Foilsithe in Genet Sel Evol (2021)

Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits

le Xiang, Ruidong, van den Berg, Irene, MacLeod, Iona M., Hayes, Benjamin J., Prowse-Wilkins, Claire P., Wang, Min, Bolormaa, Sunduimijid, Liu, Zhiqian, Rochfort, Simone J., Reich, Coralie M., Mason, Brett A., Vander Jagt, Christy J., Daetwyler, Hans D., Lund, Mogens S., Chamberlain, Amanda J., Goddard, Michael E.
Foilsithe in Proc Natl Acad Sci U S A (2019)

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

le Xiang, Ruidong, Hayes, Ben J., Vander Jagt, Christy J., MacLeod, Iona M., Khansefid, Majid, Bowman, Phil J., Yuan, Zehu, Prowse-Wilkins, Claire P., Reich, Coralie M., Mason, Brett A., Garner, Josie B., Marett, Leah C., Chen, Yizhou, Bolormaa, Sunduimijid, Daetwyler, Hans D., Chamberlain, Amanda J., Goddard, Michael E.
Foilsithe in BMC Genomics (2018)

A multi-tissue atlas of regulatory variants in cattle

le Liu, Shuli, Gao, Yahui, Canela-Xandri, Oriol, Wang, Sheng, Yu, Ying, Cai, Wentao, Li, Bingjie, Xiang, Ruidong, Chamberlain, Amanda J., Pairo-Castineira, Erola, D’Mellow, Kenton, Rawlik, Konrad, Xia, Charley, Yao, Yuelin, Navarro, Pau, Rocha, Dominique, Li, Xiujin, Yan, Ze, Li, Congjun, Rosen, Benjamin D., Van Tassell, Curtis P., Vanraden, Paul M., Zhang, Shengli, Ma, Li, Cole, John B., Liu, George E., Tenesa, Albert, Fang, Lingzhao
Foilsithe in Nat Genet (2022)