Simple regression models as a threshold for selecting AFLP loci with reduced error rates

door Price, David L, Casler, Michael D
Gepubliceerd in 2012

Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample

door Ramstein, Guillaume P., Casler, Michael D.
Gepubliceerd in G3 (Bethesda) (2019)

Has Selection for Improved Agronomic Traits Made Reed Canarygrass Invasive?

door Jakubowski, Andrew R., Casler, Michael D., Jackson, Randall D.
Gepubliceerd in 2011

Selection Signatures in Four Lignin Genes from Switchgrass Populations Divergently Selected for In Vitro Dry Matter Digestibility

door Chen, Shiyu, Kaeppler, Shawn M., Vogel, Kenneth P., Casler, Michael D.
Gepubliceerd in PLoS One (2016)

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass

door Grabowski, Paul P, Morris, Geoffrey P, Casler, Michael D, Borevitz, Justin O
Gepubliceerd in 2014

Quantitative Trait Loci for Freezing Tolerance in a Lowland x Upland Switchgrass Population

door Poudel, Hari P., Sanciangco, Millicent D., Kaeppler, Shawn M., Buell, C. Robin, Casler, Michael D.
Gepubliceerd in Front Plant Sci (2019)

Genomic Prediction for Winter Survival of Lowland Switchgrass in the Northern USA

door Poudel, Hari P., Sanciangco, Millicent D., Kaeppler, Shawn M., Buell, C. Robin, Casler, Michael D.
Gepubliceerd in G3 (Bethesda) (2019)

Accelerating the Switchgrass (Panicum virgatum L.) Breeding Cycle Using Genomic Selection Approaches

door Lipka, Alexander E., Lu, Fei, Cherney, Jerome H., Buckler, Edward S., Casler, Michael D., Costich, Denise E.
Gepubliceerd in PLoS One (2014)

Sclerotinia homoeocarpa Overwinters in Turfgrass and Is Present in Commercial Seed

door Rioux, Renée A., Shultz, Jeanette, Garcia, Michelle, Willis, David Kyle, Casler, Michael, Bonos, Stacy, Smith, Damon, Kerns, James
Gepubliceerd in 2014

Using variable importance measures to identify a small set of SNPs to predict heading date in perennial ryegrass

door Byrne, Stephen L., Conaghan, Patrick, Barth, Susanne, Arojju, Sai Krishna, Casler, Michael, Michel, Thibauld, Velmurugan, Janaki, Milbourne, Dan
Gepubliceerd in Sci Rep (2017)

Genome-Wide Association Study Based on Multiple Imputation with Low-Depth Sequencing Data: Application to Biofuel Traits in Reed Canarygrass

door Ramstein, Guillaume P., Lipka, Alexander E., Lu, Fei, Costich, Denise E., Cherney, Jerome H., Buckler, Edward S., Casler, Michael D.
Gepubliceerd in G3 (Bethesda) (2015)

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

door Lu, Fei, Lipka, Alexander E., Glaubitz, Jeff, Elshire, Rob, Cherney, Jerome H., Casler, Michael D., Buckler, Edward S., Costich, Denise E.
Gepubliceerd in 2013

Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium

door Ramstein, Guillaume P., Evans, Joseph, Kaeppler, Shawn M., Mitchell, Robert B., Vogel, Kenneth P., Buell, C. Robin, Casler, Michael D.
Gepubliceerd in G3 (Bethesda) (2016)

Genomic prediction of crown rust resistance in Lolium perenne

door Arojju, Sai Krishna, Conaghan, Patrick, Barth, Susanne, Milbourne, Dan, Casler, Michael D., Hodkinson, Trevor R., Michel, Thibauld, Byrne, Stephen L.
Gepubliceerd in BMC Genet (2018)

SNP Discovery with EST and NextGen Sequencing in Switchgrass (Panicum virgatum L.)

door Ersoz, Elhan S., Wright, Mark H., Pangilinan, Jasmyn L., Sheehan, Moira J., Tobias, Christian, Casler, Michael D., Buckler, Edward S., Costich, Denise E.
Gepubliceerd in 2012

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

door Evans, Joseph, Kim, Jeongwoon, Childs, Kevin L, Vaillancourt, Brieanne, Crisovan, Emily, Nandety, Aruna, Gerhardt, Daniel J, Richmond, Todd A, Jeddeloh, Jeffrey A, Kaeppler, Shawn M, Casler, Michael D, Buell, C Robin
Gepubliceerd in Plant J (2014)

Genome-Wide Association Study in Pseudo-F(2) Populations of Switchgrass Identifies Genetic Loci Affecting Heading and Anthesis Dates

door Taylor, Megan, Tornqvist, Carl-Erik, Zhao, Xiongwei, Grabowski, Paul, Doerge, Rebecca, Ma, Jianxin, Volenec, Jeffrey, Evans, Joseph, Ramstein, Guillaume P., Sanciangco, Millicent D., Buell, C. Robin, Casler, Michael D., Jiang, Yiwei
Gepubliceerd in Front Plant Sci (2018)

Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

door Clifton‐Brown, John, Harfouche, Antoine, Casler, Michael D., Dylan Jones, Huw, Macalpine, William J., Murphy‐Bokern, Donal, Smart, Lawrence B., Adler, Anneli, Ashman, Chris, Awty‐Carroll, Danny, Bastien, Catherine, Bopper, Sebastian, Botnari, Vasile, Brancourt‐Hulmel, Maryse, Chen, Zhiyong, Clark, Lindsay V., Cosentino, Salvatore, Dalton, Sue, Davey, Chris, Dolstra, Oene, Donnison, Iain, Flavell, Richard, Greef, Joerg, Hanley, Steve, Hastings, Astley, Hertzberg, Magnus, Hsu, Tsai‐Wen, Huang, Lin S., Iurato, Antonella, Jensen, Elaine, Jin, Xiaoli, Jørgensen, Uffe, Kiesel, Andreas, Kim, Do‐Soon, Liu, Jianxiu, McCalmont, Jon P., McMahon, Bernard G., Mos, Michal, Robson, Paul, Sacks, Erik J., Sandu, Anatolii, Scalici, Giovanni, Schwarz, Kai, Scordia, Danilo, Shafiei, Reza, Shield, Ian, Slavov, Gancho, Stanton, Brian J., Swaminathan, Kankshita, Taylor, Gail, Torres, Andres F., Trindade, Luisa M., Tschaplinski, Timothy, Tuskan, Gerald A., Yamada, Toshihiko, Yeon Yu, Chang, Zalesny, Ronald S., Zong, Junqin, Lewandowski, Iris
Gepubliceerd in Glob Change Biol Bioenergy (2018)

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

door Lovell, John T., MacQueen, Alice H., Mamidi, Sujan, Bonnette, Jason, Jenkins, Jerry, Napier, Joseph D., Sreedasyam, Avinash, Healey, Adam, Session, Adam, Shu, Shengqiang, Barry, Kerrie, Bonos, Stacy, Boston, LoriBeth, Daum, Christopher, Deshpande, Shweta, Ewing, Aren, Grabowski, Paul P., Haque, Taslima, Harrison, Melanie, Jiang, Jiming, Kudrna, Dave, Lipzen, Anna, Pendergast, Thomas H., Plott, Chris, Qi, Peng, Saski, Christopher A., Shakirov, Eugene V., Sims, David, Sharma, Manoj, Sharma, Rita, Stewart, Ada, Singan, Vasanth R., Tang, Yuhong, Thibivillier, Sandra, Webber, Jenell, Weng, Xiaoyu, Williams, Melissa, Wu, Guohong Albert, Yoshinaga, Yuko, Zane, Matthew, Zhang, Li, Zhang, Jiyi, Behrman, Kathrine D., Boe, Arvid R., Fay, Philip A., Fritschi, Felix B., Jastrow, Julie D., Lloyd-Reilley, John, Martínez-Reyna, Juan Manuel, Matamala, Roser, Mitchell, Robert B., Rouquette, Francis M., Ronald, Pamela, Saha, Malay, Tobias, Christian M., Udvardi, Michael, Wing, Rod A., Wu, Yanqi, Bartley, Laura E., Casler, Michael, Devos, Katrien M., Lowry, David B., Rokhsar, Daniel S., Grimwood, Jane, Juenger, Thomas E., Schmutz, Jeremy
Gepubliceerd in Nature (2021)