Simple regression models as a threshold for selecting AFLP loci with reduced error rates

por Price, David L, Casler, Michael D
Publicado 2012

Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample

por Ramstein, Guillaume P., Casler, Michael D.
Publicado en G3 (Bethesda) (2019)

Has Selection for Improved Agronomic Traits Made Reed Canarygrass Invasive?

por Jakubowski, Andrew R., Casler, Michael D., Jackson, Randall D.
Publicado 2011

Selection Signatures in Four Lignin Genes from Switchgrass Populations Divergently Selected for In Vitro Dry Matter Digestibility

por Chen, Shiyu, Kaeppler, Shawn M., Vogel, Kenneth P., Casler, Michael D.
Publicado en PLoS One (2016)

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass

por Grabowski, Paul P, Morris, Geoffrey P, Casler, Michael D, Borevitz, Justin O
Publicado 2014

Quantitative Trait Loci for Freezing Tolerance in a Lowland x Upland Switchgrass Population

por Poudel, Hari P., Sanciangco, Millicent D., Kaeppler, Shawn M., Buell, C. Robin, Casler, Michael D.
Publicado en Front Plant Sci (2019)

Genomic Prediction for Winter Survival of Lowland Switchgrass in the Northern USA

por Poudel, Hari P., Sanciangco, Millicent D., Kaeppler, Shawn M., Buell, C. Robin, Casler, Michael D.
Publicado en G3 (Bethesda) (2019)

Accelerating the Switchgrass (Panicum virgatum L.) Breeding Cycle Using Genomic Selection Approaches

por Lipka, Alexander E., Lu, Fei, Cherney, Jerome H., Buckler, Edward S., Casler, Michael D., Costich, Denise E.
Publicado en PLoS One (2014)

Sclerotinia homoeocarpa Overwinters in Turfgrass and Is Present in Commercial Seed

por Rioux, Renée A., Shultz, Jeanette, Garcia, Michelle, Willis, David Kyle, Casler, Michael, Bonos, Stacy, Smith, Damon, Kerns, James
Publicado 2014

Using variable importance measures to identify a small set of SNPs to predict heading date in perennial ryegrass

por Byrne, Stephen L., Conaghan, Patrick, Barth, Susanne, Arojju, Sai Krishna, Casler, Michael, Michel, Thibauld, Velmurugan, Janaki, Milbourne, Dan
Publicado en Sci Rep (2017)

Genome-Wide Association Study Based on Multiple Imputation with Low-Depth Sequencing Data: Application to Biofuel Traits in Reed Canarygrass

por Ramstein, Guillaume P., Lipka, Alexander E., Lu, Fei, Costich, Denise E., Cherney, Jerome H., Buckler, Edward S., Casler, Michael D.
Publicado en G3 (Bethesda) (2015)

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

por Lu, Fei, Lipka, Alexander E., Glaubitz, Jeff, Elshire, Rob, Cherney, Jerome H., Casler, Michael D., Buckler, Edward S., Costich, Denise E.
Publicado 2013

Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium

por Ramstein, Guillaume P., Evans, Joseph, Kaeppler, Shawn M., Mitchell, Robert B., Vogel, Kenneth P., Buell, C. Robin, Casler, Michael D.
Publicado en G3 (Bethesda) (2016)

Genomic prediction of crown rust resistance in Lolium perenne

por Arojju, Sai Krishna, Conaghan, Patrick, Barth, Susanne, Milbourne, Dan, Casler, Michael D., Hodkinson, Trevor R., Michel, Thibauld, Byrne, Stephen L.
Publicado en BMC Genet (2018)

SNP Discovery with EST and NextGen Sequencing in Switchgrass (Panicum virgatum L.)

por Ersoz, Elhan S., Wright, Mark H., Pangilinan, Jasmyn L., Sheehan, Moira J., Tobias, Christian, Casler, Michael D., Buckler, Edward S., Costich, Denise E.
Publicado 2012

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

por Evans, Joseph, Kim, Jeongwoon, Childs, Kevin L, Vaillancourt, Brieanne, Crisovan, Emily, Nandety, Aruna, Gerhardt, Daniel J, Richmond, Todd A, Jeddeloh, Jeffrey A, Kaeppler, Shawn M, Casler, Michael D, Buell, C Robin
Publicado en Plant J (2014)

Genome-Wide Association Study in Pseudo-F(2) Populations of Switchgrass Identifies Genetic Loci Affecting Heading and Anthesis Dates

por Taylor, Megan, Tornqvist, Carl-Erik, Zhao, Xiongwei, Grabowski, Paul, Doerge, Rebecca, Ma, Jianxin, Volenec, Jeffrey, Evans, Joseph, Ramstein, Guillaume P., Sanciangco, Millicent D., Buell, C. Robin, Casler, Michael D., Jiang, Yiwei
Publicado en Front Plant Sci (2018)

Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

por Clifton‐Brown, John, Harfouche, Antoine, Casler, Michael D., Dylan Jones, Huw, Macalpine, William J., Murphy‐Bokern, Donal, Smart, Lawrence B., Adler, Anneli, Ashman, Chris, Awty‐Carroll, Danny, Bastien, Catherine, Bopper, Sebastian, Botnari, Vasile, Brancourt‐Hulmel, Maryse, Chen, Zhiyong, Clark, Lindsay V., Cosentino, Salvatore, Dalton, Sue, Davey, Chris, Dolstra, Oene, Donnison, Iain, Flavell, Richard, Greef, Joerg, Hanley, Steve, Hastings, Astley, Hertzberg, Magnus, Hsu, Tsai‐Wen, Huang, Lin S., Iurato, Antonella, Jensen, Elaine, Jin, Xiaoli, Jørgensen, Uffe, Kiesel, Andreas, Kim, Do‐Soon, Liu, Jianxiu, McCalmont, Jon P., McMahon, Bernard G., Mos, Michal, Robson, Paul, Sacks, Erik J., Sandu, Anatolii, Scalici, Giovanni, Schwarz, Kai, Scordia, Danilo, Shafiei, Reza, Shield, Ian, Slavov, Gancho, Stanton, Brian J., Swaminathan, Kankshita, Taylor, Gail, Torres, Andres F., Trindade, Luisa M., Tschaplinski, Timothy, Tuskan, Gerald A., Yamada, Toshihiko, Yeon Yu, Chang, Zalesny, Ronald S., Zong, Junqin, Lewandowski, Iris
Publicado en Glob Change Biol Bioenergy (2018)

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

por Lovell, John T., MacQueen, Alice H., Mamidi, Sujan, Bonnette, Jason, Jenkins, Jerry, Napier, Joseph D., Sreedasyam, Avinash, Healey, Adam, Session, Adam, Shu, Shengqiang, Barry, Kerrie, Bonos, Stacy, Boston, LoriBeth, Daum, Christopher, Deshpande, Shweta, Ewing, Aren, Grabowski, Paul P., Haque, Taslima, Harrison, Melanie, Jiang, Jiming, Kudrna, Dave, Lipzen, Anna, Pendergast, Thomas H., Plott, Chris, Qi, Peng, Saski, Christopher A., Shakirov, Eugene V., Sims, David, Sharma, Manoj, Sharma, Rita, Stewart, Ada, Singan, Vasanth R., Tang, Yuhong, Thibivillier, Sandra, Webber, Jenell, Weng, Xiaoyu, Williams, Melissa, Wu, Guohong Albert, Yoshinaga, Yuko, Zane, Matthew, Zhang, Li, Zhang, Jiyi, Behrman, Kathrine D., Boe, Arvid R., Fay, Philip A., Fritschi, Felix B., Jastrow, Julie D., Lloyd-Reilley, John, Martínez-Reyna, Juan Manuel, Matamala, Roser, Mitchell, Robert B., Rouquette, Francis M., Ronald, Pamela, Saha, Malay, Tobias, Christian M., Udvardi, Michael, Wing, Rod A., Wu, Yanqi, Bartley, Laura E., Casler, Michael, Devos, Katrien M., Lowry, David B., Rokhsar, Daniel S., Grimwood, Jane, Juenger, Thomas E., Schmutz, Jeremy
Publicado en Nature (2021)