CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

door Heberle, Henry, Carazzolle, Marcelo Falsarella, Telles, Guilherme P., Meirelles, Gabriela Vaz, Minghim, Rosane
Gepubliceerd in BMC Bioinformatics (2017)

A web-based bioinformatics interface applied to the GENOSOJA Project: Databases and pipelines

door do Nascimento, Leandro Costa, Costa, Gustavo Gilson Lacerda, Binneck, Eliseu, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Gepubliceerd in 2012

Development of novel EST-SSR markers in the macaúba palm (Acrocomia aculeata) using transcriptome sequencing and cross-species transferability in Arecaceae species

door Bazzo, Bárbara Regina, de Carvalho, Lucas Miguel, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães, Colombo, Carlos Augusto
Gepubliceerd in BMC Plant Biol (2018)

Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance

door Vidal, Ramon Oliveira, do Nascimento, Leandro Costa, Mondego, Jorge Maurício Costa, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Gepubliceerd in 2012

Positive Selection Evidence in Xylose-Related Genes Suggests Methylglyoxal Reductase as a Target for the Improvement of Yeasts’ Fermentation in Industry

door Borelli, Guilherme, Fiamenghi, Mateus Bernabe, dos Santos, Leandro Vieira, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães, José, Juliana
Gepubliceerd in Genome Biol Evol (2019)

Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in Trichoderma reesei RUT-30

door Borin, Gustavo Pagotto, Carazzolle, Marcelo Falsarella, dos Santos, Renato Augusto Corrêa, Riaño-Pachón, Diego Mauricio, Oliveira, Juliana Velasco de Castro
Gepubliceerd in Front Bioeng Biotechnol (2018)

IIS – Integrated Interactome System: A Web-Based Platform for the Annotation, Analysis and Visualization of Protein-Metabolite-Gene-Drug Interactions by Integrating a Variety of Da...

door Carazzolle, Marcelo Falsarella, de Carvalho, Lucas Miguel, Slepicka, Hugo Henrique, Vidal, Ramon Oliveira, Pereira, Gonçalo Amarante Guimarães, Kobarg, Jörg, Vaz Meirelles, Gabriela
Gepubliceerd in 2014

EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species

door Nascimento, Leandro Costa, Salazar, Marcela Mendes, Lepikson-Neto, Jorge, Camargo, Eduardo Leal Oliveira, Parreiras, Lucas Salera, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Gepubliceerd in Database (Oxford) (2017)

Phenotypic and Genotypic Features of a Salmonella Heidelberg Strain Isolated in Broilers in Brazil and Their Possible Association to Antibiotics and Short-Chain Organic Acids Resis...

door Santin, Elizabeth, Hayashi, Ricardo Mitsuo, Wammes, Jessica Caroline, Gonzalez-Esquerra, Ricardo, Carazzolle, Marcelo Falsarella, Freire, Caio César de Melo, Monzani, Paulo Sérgio, da Cunha, Anderson Ferreira
Gepubliceerd in Front Vet Sci (2017)

An integrated database of Eucalyptus spp. genome project

door Nascimento, Leandro Costa, Neto, Jorge Lepikson, Salaza, Marcela Mendes, Camargo, Eduardo Leal Oliveira, Marques, Wesley Leoricy, Gonçalves, Danieli Cristina, Vidal, Ramon Oliveira, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Gepubliceerd in 2011

Effect of Feeding Bacillus subtilis Spores to Broilers Challenged with Salmonella enterica serovar Heidelberg Brazilian Strain UFPR1 on Performance, Immune Response, and Gut Health

door Hayashi, Ricardo Mitsuo, Lourenço, Mariana Camargo, Kraieski, Antônio Leonardo, Araujo, Raquel Bighetti, Gonzalez-Esquerra, Ricardo, Leonardecz, Eduardo, da Cunha, Anderson Ferreira, Carazzolle, Marcelo Falsarella, Monzani, Paulo Sérgio, Santin, Elizabeth
Gepubliceerd in Front Vet Sci (2018)

Subtractive libraries for prospecting differentially expressed genes in the soybean under water deficit

door Rodrigues, Fabiana Aparecida, Marcolino-Gomes, Juliana, de Fátima Corrêa Carvalho, Josirlei, do Nascimento, Leandro Costa, Neumaier, Norman, Farias, José Renato Bouças, Carazzolle, Marcelo Falsarella, Marcelino, Francismar Corrêa, Nepomuceno, Alexandre Lima
Gepubliceerd in 2012

Conversion of an inactive xylose isomerase into a functional enzyme by co-expression of GroEL-GroES chaperonins in Saccharomyces cerevisiae

door Temer, Beatriz, dos Santos, Leandro Vieira, Negri, Victor Augusti, Galhardo, Juliana Pimentel, Magalhães, Pedro Henrique Mello, José, Juliana, Marschalk, Cidnei, Corrêa, Thamy Lívia Ribeiro, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães
Gepubliceerd in BMC Biotechnol (2017)

Guanylate-binding protein-1 is a potential new therapeutic target for triple-negative breast cancer

door Quintero, Melissa, Adamoski, Douglas, Reis, Larissa Menezes dos, Ascenção, Carolline Fernanda Rodrigues, Oliveira, Krishina Ratna Sousa de, Gonçalves, Kaliandra de Almeida, Dias, Marília Meira, Carazzolle, Marcelo Falsarella, Dias, Sandra Martha Gomes
Gepubliceerd in BMC Cancer (2017)

Genome Assembly of a Highly Aldehyde-Resistant Saccharomyces cerevisiae SA1-Derived Industrial Strain

door Nagamatsu, Sheila Tiemi, Teixeira, Gleidson Silva, de Mello, Fellipe da Silveira Bezerra, Tizei, Pedro Augusto Galvão, Nakagawa, Bruna Tatsue Grichoswski, de Carvalho, Lucas Miguel, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Gepubliceerd in Microbiol Resour Announc (2019)

A High-Throughput Data Mining of Single Nucleotide Polymorphisms in Coffea Species Expressed Sequence Tags Suggests Differential Homeologous Gene Expression in the Allotetraploid C...

door Vidal, Ramon Oliveira, Mondego, Jorge Maurício Costa, Pot, David, Ambrósio, Alinne Batista, Andrade, Alan Carvalho, Pereira, Luiz Filipe Protasio, Colombo, Carlos Augusto, Vieira, Luiz Gonzaga Esteves, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães
Gepubliceerd in 2010

Unraveling the genetic basis of xylose consumption in engineered Saccharomyces cerevisiae strains

door dos Santos, Leandro Vieira, Carazzolle, Marcelo Falsarella, Nagamatsu, Sheila Tiemi, Sampaio, Nádia Maria Vieira, Almeida, Ludimila Dias, Pirolla, Renan Augusto Siqueira, Borelli, Guilherme, Corrêa, Thamy Lívia Ribeiro, Argueso, Juan Lucas, Pereira, Gonçalo Amarante Guimarães
Gepubliceerd in Sci Rep (2016)

New insights into Phakopsora pachyrhizi infection based on transcriptome analysis in planta

door Rincão, Michelle Pires, de Carvalho, Mayra Costa da Cruz Gallo, Nascimento, Leandro Costa, Lopes-Caitar, Valéria S., de Carvalho, Kenia, Darben, Luana M., Yokoyama, Alessandra, Carazzolle, Marcelo Falsarella, Abdelnoor, Ricardo Vilela, Marcelino-Guimarães, Francismar Correa
Gepubliceerd in Genet Mol Biol (2018)

Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis

door Ivamoto, Suzana Tiemi, Reis, Osvaldo, Domingues, Douglas Silva, dos Santos, Tiago Benedito, de Oliveira, Fernanda Freitas, Pot, David, Leroy, Thierry, Vieira, Luiz Gonzaga Esteves, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães, Pereira, Luiz Filipe Protasio
Gepubliceerd in PLoS One (2017)

Analysis of the ergosterol biosynthesis pathway cloning, molecular characterization and phylogeny of lanosterol 14 α-demethylase (ERG11) gene of Moniliophthora perniciosa

door de Oliveira Ceita, Geruza, Vilas-Boas, Laurival Antônio, Castilho, Marcelo Santos, Carazzolle, Marcelo Falsarella, Pirovani, Carlos Priminho, Selbach-Schnadelbach, Alessandra, Gramacho, Karina Peres, Ramos, Pablo Ivan Pereira, Barbosa, Luciana Veiga, Pereira, Gonçalo Amarante Guimarães, Góes-Neto, Aristóteles
Gepubliceerd in Genet Mol Biol (2014)