Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability

Por Cao, Youfang, Liang, Jie
Publicado em 2008

Adaptively biased sequential importance sampling for rare events in reaction networks with comparison to exact solutions from finite buffer dCME method

Por Cao, Youfang, Liang, Jie
Publicado em 2013

NONLINEAR LANGEVIN MODEL WITH PRODUCT STOCHASTICITY FOR BIOLOGICAL NETWORKS: THE CASE OF THE SCHNAKENBERG MODEL

Por Cao, Youfang, Liang, Jie
Publicado no J Syst Sci Complex (2010)

Exact Computation of Probability Landscape of Stochastic Networks of Single Input and Coupled Toggle Switch Modules

Por Terebus, Anna, Cao, Youfang, Liang, Jie
Publicado no Conf Proc IEEE Eng Med Biol Soc (2014)

State space truncation with quantified errors for accurate solutions to discrete Chemical Master Equation

Por Cao, Youfang, Terebus, Anna, Liang, Jie
Publicado no Bull Math Biol (2016)

ACCURATE CHEMICAL MASTER EQUATION SOLUTION USING MULTI-FINITE BUFFERS

Por Cao, Youfang, Terebus, Anna, Liang, Jie
Publicado no Multiscale Model Simul (2016)

Stochastic probability landscape model for switching efficiency, robustness, and differential threshold for induction of genetic circuit in phage λ

Por Cao, Youfang, Lu, Hsiao-Mei, Liang, Jie
Publicado em 2008

Probability landscape of heritable and robust epigenetic state of lysogeny in phage lambda

Por Cao, Youfang, Lu, Hsiao-Mei, Liang, Jie
Publicado em 2010

Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis

Por Cao, Youfang, Naveed, Hammad, Liang, Claire, Liang, Jie
Publicado em 2013

Mechanisms of Stochastic Focusing and Defocusing in Biological Reaction Networks: Insight from Accurate Chemical Master Equation (ACME) Solutions

Por Gürsoy, Gamze, Terebus, Anna, Cao, Youfang, Liang, Jie
Publicado no Conf Proc IEEE Eng Med Biol Soc (2016)

CD8(+) lymphocyte control of SIV infection during antiretroviral therapy

Por Cao, Youfang, Cartwright, Emily K., Silvestri, Guido, Perelson, Alan S.
Publicado no PLoS Pathog (2018)

Mechanical Model of Geometric Cell and Topological Algorithm for Cell Dynamics from Single-Cell to Formation of Monolayered Tissues with Pattern

Por Kachalo, Sëma, Naveed, Hammad, Cao, Youfang, Zhao, Jieling, Liang, Jie
Publicado no PLoS One (2015)

Roles of regulated internalization in the polarization of cell surface receptors

Por Tian, Wei, Cao, Youfang, Ismael, Amber, Stone, David, Liang, Jie
Publicado no Conf Proc IEEE Eng Med Biol Soc (2014)

Dynamic cellular finite-element method for modelling large-scale cell migration and proliferation under the control of mechanical and biochemical cues: a study of re-epithelializat...

Por Zhao, Jieling, Cao, Youfang, DiPietro, Luisa A., Liang, Jie
Publicado no J R Soc Interface (2017)

Probabilistic control of HIV latency and transactivation by the Tat gene circuit

Por Cao, Youfang, Lei, Xue, Ribeiro, Ruy M., Perelson, Alan S., Liang, Jie
Publicado no Proc Natl Acad Sci U S A (2018)

Prediction of protein structural class with Rough Sets

Por Cao, Youfang, Liu, Shi, Zhang, Lida, Qin, Jie, Wang, Jiang, Tang, Kexuan
Publicado em 2006

Modeling spatial population dynamics of stem cell lineage in tissue growth

Por Cao, Youfang, Liang, Claire, Naveed, Hammad, Li, Yingzi, Chen, Meng, Nie, Qing
Publicado em 2012

Dynamic mechanical finite element model of biological cells for studying cellular pattern formation

Por Zhao, Jieling, Naveed, Hammad, Kachalo, Sema, Cao, Youfang, Tian, Wei, Liang, Jie
Publicado em 2013

Multiscale modeling of cellular epigenetic states: stochasticity in molecular networks, chromatin folding in cell nuclei, and tissue pattern formation of cells

Por Liang, Jie, Cao, Youfang, Gürsoy, Gamze, Naveed, Hammad, Terebus, Anna, Zhao, Jieling
Publicado no Crit Rev Biomed Eng (2015)

Nonlatching positive feedback enables robust bimodality by decoupling expression noise from the mean

Por Razooky, Brandon S., Cao, Youfang, Hansen, Maike M. K., Perelson, Alan S., Simpson, Michael L., Weinberger, Leor S.
Publicado no PLoS Biol (2017)