Development of a high throughput assay for indirectly measuring phage growth using the OmniLog(TM) system

Por Henry, Matthew, Biswas, Biswajit, Vincent, Leah, Mokashi, Vishwesh, Schuch, Raymond, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga
Publicado em 2012

miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation

Por Cer, Regina Z, Herrera-Galeano, J Enrique, Anderson, Joseph J, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh P
Publicado em 2014

Bioinformatic Characterization of Mosquito Viromes within the Eastern United States and Puerto Rico: Discovery of Novel Viruses

Por Frey, Kenneth G., Biser, Tara, Hamilton, Theron, Santos, Carlos J., Pimentel, Guillermo, Mokashi, Vishwesh P., Bishop-Lilly, Kimberly A.
Publicado no Evol Bioinform Online (2016)

BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results

Por Herrera-Galeano, Jesus Enrique, Frey, Kenneth G, Cer, Regina Z, Mateczun, Alfred J, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh P
Publicado em 2014

A Yersinia pestis-specific, lytic phage preparation significantly reduces viable Y. pestis on various hard surfaces experimentally contaminated with the bacterium

Por Rashid, Mohammed H., Revazishvili, Tamara, Dean, Timothy, Butani, Amy, Verratti, Kathleen, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga, Sulakvelidze, Alexander, Rajanna, Chythanya
Publicado em 2012

PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data

Por Chang, Wenling E, Sarver, Keri, Higgs, Brandon W, Read, Timothy D, Nolan, Nichole ME, Chapman, Carol E, Bishop-Lilly, Kimberly A, Sozhamannan, Shanmuga
Publicado em 2011

Genome Sequencing of 15 Clinical Vibrio Isolates, Including 13 Non-O1/Non-O139 Serogroup Strains

Por Bishop-Lilly, Kimberly A., Johnson, Shannon L., Verratti, Kathleen, Luu, Truong, Khiani, Amy, Awosika, Joy, Mokashi, Vishwesh P., Chain, Patrick S. G., Sozhamannan, Shanmuga
Publicado em 2014

Finishing genomes with limited resources: lessons from an ensemble of microbial genomes

Por Nagarajan, Niranjan, Cook, Christopher, Di Bonaventura, MariaPia, Ge, Hong, Richards, Allen, Bishop-Lilly, Kimberly A, DeSalle, Robert, Read, Timothy D, Pop, Mihai
Publicado em 2010

Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate

Por Bishop-Lilly, Kimberly A., Ge, Hong, Butani, Amy, Osborne, Brian, Verratti, Kathleen, Mokashi, Vishwesh, Nagarajan, Niranjan, Pop, Mihai, Read, Timothy D., Richards, Allen L.
Publicado em 2013

Novel High-Molecular-Weight, R-Type Bacteriocins of Clostridium difficile

Por Gebhart, Dana, Williams, Steven R., Bishop-Lilly, Kimberly A., Govoni, Gregory R., Willner, Kristin M., Butani, Amy, Sozhamannan, Shanmuga, Martin, David, Fortier, Louis-Charles, Scholl, Dean
Publicado em 2012

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood

Por Frey, Kenneth G, Herrera-Galeano, Jesus Enrique, Redden, Cassie L, Luu, Truong V, Servetas, Stephanie L, Mateczun, Alfred J, Mokashi, Vishwesh P, Bishop-Lilly, Kimberly A
Publicado em 2014

Full-Genome Sequence of Human Betacoronavirus 2c Jordan-N3/2012 after Serial Passage in Mammalian Cells

Por Frey, Kenneth G., Redden, Cassie L., Bishop-Lilly, Kimberly A., Johnson, Reed, Hensley, Lisa E., Raviprakash, Kanakatte, Luke, Thomas, Kochel, Tad, Mokashi, Vishwesh P., Defang, Gabriel N.
Publicado em 2014

Characterization of pPCP1 Plasmids in Yersinia pestis Strains Isolated from the Former Soviet Union

Por Rajanna, Chythanya, Revazishvili, Tamara, Rashid, Mohammed H., Chubinidze, Svetlana, Bakanidze, Lela, Tsanava, Shota, Imnadze, Paata, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga, Gibbons, Henry S., Morris, J. Glenn, Sulakvelidze, Alexander
Publicado em 2010

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

Por Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J., Davenport, Karen W., Bishop-Lilly, Kimberly A., Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P., Chain, Patrick S.G.
Publicado no Nucleic Acids Res (2017)

Differential MicroRNA Analyses of Burkholderia pseudomallei- and Francisella tularensis-Exposed hPBMCs Reveal Potential Biomarkers

Por Cer, Regina Z., Herrera-Galeano, J. Enrique, Frey, Kenneth G., Schully, Kevin L., Luu, Truong V., Pesce, John, Mokashi, Vishwesh P., Keane-Myers, Andrea M., Bishop-Lilly, Kimberly A.
Publicado no Int J Genomics (2017)

Characterizing Phage Genomes for Therapeutic Applications

Por Philipson, Casandra W., Voegtly, Logan J., Lueder, Matthew R., Long, Kyle A., Rice, Gregory K., Frey, Kenneth G., Biswas, Biswajit, Cer, Regina Z., Hamilton, Theron, Bishop-Lilly, Kimberly A.
Publicado no Viruses (2018)

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity

Por Fouts, Derrick E, Klumpp, Jochen, Bishop-Lilly, Kimberly A, Rajavel, Mathumathi, Willner, Kristin M, Butani, Amy, Henry, Matthew, Biswas, Biswajit, Li, Manrong, Albert, M John, Loessner, Martin J, Calendar, Richard, Sozhamannan, Shanmuga
Publicado em 2013

Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity

Por Chapman, Carol, Henry, Matthew, Bishop-Lilly, Kimberly A., Awosika, Joy, Briska, Adam, Ptashkin, Ryan N., Wagner, Trevor, Rajanna, Chythanya, Tsang, Hsinyi, Johnson, Shannon L., Mokashi, Vishwesh P., Chain, Patrick S. G., Sozhamannan, Shanmuga
Publicado no PLoS One (2015)

Arbovirus Detection in Insect Vectors by Rapid, High-Throughput Pyrosequencing

Por Bishop-Lilly, Kimberly A., Turell, Michael J., Willner, Kristin M., Butani, Amy, Nolan, Nichole M. E., Lentz, Shannon M., Akmal, Arya, Mateczun, Al, Brahmbhatt, Trupti N., Sozhamannan, Shanmuga, Whitehouse, Chris A., Read, Timothy D.
Publicado em 2010

Genomic Characterization of USA300 Methicillin-Resistant Staphylococcus aureus (MRSA) to Evaluate Intraclass Transmission and Recurrence of Skin and Soft Tissue Infection (SSTI) Am...

Por Millar, Eugene V., Rice, Gregory K., Elassal, Emad M., Schlett, Carey D., Bennett, Jason W., Redden, Cassie L., Mor, Deepika, Law, Natasha N., Tribble, David R., Hamilton, Theron, Ellis, Michael W., Bishop-Lilly, Kimberly A.
Publicado no Clin Infect Dis (2017)