Convergence of Free Energy Profile of Coumarin in Lipid Bilayer

por Paloncýová, Markéta, Berka, Karel, Otyepka, Michal
Publicado 2012

Membrane Position of Ibuprofen Agrees with Suggested Access Path Entrance to Cytochrome P450 2C9 Active Site

por Berka, Karel, Hendrychová, Tereza, Anzenbacher, Pavel, Otyepka, Michal
Publicado 2011

MolMeDB: Molecules on Membranes Database

por Juračka, Jakub, Šrejber, Martin, Melíková, Michaela, Bazgier, Václav, Berka, Karel
Publicado en Database (Oxford) (2019)

Optimized SQE atomic charges for peptides accessible via a web application

por Schindler, Ondřej, Raček, Tomáš, Maršavelski, Aleksandra, Koča, Jaroslav, Berka, Karel, Svobodová, Radka
Publicado en J Cheminform (2021)

Correction to: Optimized SQE atomic charges for peptides accessible via a web application

por Schindler, Ondřej, Raček, Tomáš, Maršavelski, Aleksandra, Koča, Jaroslav, Berka, Karel, Svobodová, Radka
Publicado en J Cheminform (2021)

PDBsum additions

por de Beer, Tjaart A. P., Berka, Karel, Thornton, Janet M., Laskowski, Roman A.
Publicado 2014

Uncovering of cytochrome P450 anatomy by SecStrAnnotator

por Midlik, Adam, Navrátilová, Veronika, Moturu, Taraka Ramji, Koča, Jaroslav, Svobodová, Radka, Berka, Karel
Publicado en Sci Rep (2021)

Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges

por Raček, Tomáš, Schindler, Ondřej, Toušek, Dominik, Horský, Vladimír, Berka, Karel, Koča, Jaroslav, Svobodová, Radka
Publicado en Nucleic Acids Res (2020)

High-performance macromolecular data delivery and visualization for the web

por Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav
Publicado en Acta Crystallogr D Struct Biol (2020)

High-performance macromolecular data delivery and visualization for the web. Corrigendum

por Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav
Publicado en Acta Crystallogr D Struct Biol (2021)

Surface properties of MoS(2) probed by inverse gas chromatography and their impact on electrocatalytic properties

por Otyepková, Eva, Lazar, Petr, Luxa, Jan, Berka, Karel, Čépe, Klára, Sofer, Zdeněk, Pumera, Martin, Otyepka, Michal
Publicado en Nanoscale (2017)

ChannelsDB: database of biomacromolecular tunnels and pores

por Pravda, Lukáš, Sehnal, David, Svobodová Vařeková, Radka, Navrátilová, Veronika, Toušek, Dominik, Berka, Karel, Otyepka, Michal, Koča, Jaroslav
Publicado en Nucleic Acids Res (2018)

Anatomy of enzyme channels

por Pravda, Lukáš, Berka, Karel, Svobodová Vařeková, Radka, Sehnal, David, Banáš, Pavel, Laskowski, Roman A, Koča, Jaroslav, Otyepka, Michal
Publicado en BMC Bioinformatics (2014)

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

por Pravda, Lukáš, Sehnal, David, Toušek, Dominik, Navrátilová, Veronika, Bazgier, Václav, Berka, Karel, Svobodová Vařeková, Radka, Koča, Jaroslav, Otyepka, Michal
Publicado en Nucleic Acids Res (2018)

MOLE 2.0: advanced approach for analysis of biomacromolecular channels

por Sehnal, David, Svobodová Vařeková, Radka, Berka, Karel, Pravda, Lukáš, Navrátilová, Veronika, Banáš, Pavel, Ionescu, Crina-Maria, Otyepka, Michal, Koča, Jaroslav
Publicado 2013

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

por Sehnal, David, Bittrich, Sebastian, Deshpande, Mandar, Svobodová, Radka, Berka, Karel, Bazgier, Václav, Velankar, Sameer, Burley, Stephen K, Koča, Jaroslav, Rose, Alexander S
Publicado en Nucleic Acids Res (2021)

MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

por Berka, Karel, Hanák, Ondřej, Sehnal, David, Banáš, Pavel, Navrátilová, Veronika, Jaiswal, Deepti, Ionescu, Crina-Maria, Svobodová Vařeková, Radka, Koča, Jaroslav, Otyepka, Michal
Publicado 2012

Cytokinin fluoroprobe reveals multiple sites of cytokinin perception at plasma membrane and endoplasmic reticulum

por Kubiasová, Karolina, Montesinos, Juan Carlos, Šamajová, Olga, Nisler, Jaroslav, Mik, Václav, Semerádová, Hana, Plíhalová, Lucie, Novák, Ondřej, Marhavý, Peter, Cavallari, Nicola, Zalabák, David, Berka, Karel, Doležal, Karel, Galuszka, Petr, Šamaj, Jozef, Strnad, Miroslav, Benková, Eva, Plíhal, Ondřej, Spíchal, Lukáš
Publicado en Nat Commun (2020)

CATH: increased structural coverage of functional space

por Sillitoe, Ian, Bordin, Nicola, Dawson, Natalie, Waman, Vaishali P, Ashford, Paul, Scholes, Harry M, Pang, Camilla S M, Woodridge, Laurel, Rauer, Clemens, Sen, Neeladri, Abbasian, Mahnaz, Le Cornu, Sean, Lam, Su Datt, Berka, Karel, Varekova, Ivana Hutařová, Svobodova, Radka, Lees, Jon, Orengo, Christine A
Publicado en Nucleic Acids Res (2020)

The Role of Protein-Protein and Protein-Membrane Interactions on P450 Function

por Scott, Emily E., Wolf, C. Roland, Otyepka, Michal, Humphreys, Sara C., Reed, James R., Henderson, Colin J., McLaughlin, Lesley A., Paloncýová, Markéta, Navrátilová, Veronika, Berka, Karel, Anzenbacher, Pavel, Dahal, Upendra P., Barnaba, Carlo, Brozik, James A., Jones, Jeffrey P., Estrada, D. Fernando, Laurence, Jennifer S., Park, Ji Won, Backes, Wayne L.
Publicado en Drug Metab Dispos (2016)