Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress

द्वारा Benham Craig J, Wang Huiquan
प्रकाशित 2006-05-01

Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins

द्वारा Ak, Prashanth, Benham, Craig J
प्रकाशित 2005

Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress

द्वारा Wang, Huiquan, Benham, Craig J
प्रकाशित 2006

Superhelical Destabilization in Regulatory Regions of Stress Response Genes

द्वारा Wang, Huiquan, Benham, Craig J
प्रकाशित 2008

Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA

द्वारा Zhabinskaya, Dina, Benham, Craig J.
प्रकाशित 2011

Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA

द्वारा Zhabinskaya, Dina, Benham, Craig J.
प्रकाशित 2012

Competitive superhelical transitions involving cruciform extrusion

द्वारा Zhabinskaya, Dina, Benham, Craig J.
प्रकाशित 2013

Emerging roles for R-loop structures in the management of topological stress

द्वारा Chedin, Frederic, Benham, Craig J.
में प्रकाशित J Biol Chem (2020)

Denaturation: An Example of a Catastrophe

द्वारा Kozak, John J., Benham, Craig J.
प्रकाशित 1974

Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters

द्वारा Wang, Huiquan, Noordewier, Michiel, Benham, Craig J.
प्रकाशित 2004

SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes

द्वारा Wang, Huiquan, Kaloper, Miroslava, Benham, Craig J.
प्रकाशित 2006

An initiation element in the yeast CUP1 promoter is recognized by RNA polymerase II in the absence of TATA box-binding protein if the DNA is negatively supercoiled

द्वारा Leblanc, Benoit P., Benham, Craig J., Clark, David J.
प्रकाशित 2000

The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome

द्वारा Strawbridge, Eva M., Benson, Gary, Gelfand, Yevgeniy, Benham, Craig J.
प्रकाशित 2010

FUBP1 and FUBP2 enforce distinct epigenetic setpoints for MYC expression in primary single murine cells

द्वारा Zheng, Ying, Dubois, Wendy, Benham, Craig, Batchelor, Eric, Levens, David
में प्रकाशित Commun Biol (2020)

Superhelical Duplex Destabilization and the Recombination Position Effect

द्वारा Sershen, Cheryl L., Mell, Joshua C., Madden, Sally M., Benham, Craig J.
प्रकाशित 2011

Mathematics of DNA structure, function and interactions

द्वारा Benham, Craig John., Harvey, Stephen., Olson, Wilma K., Sumners, De Witt., Swigon, David.
प्रकाशित 2009

OriDB: a DNA replication origin database

द्वारा Nieduszynski, Conrad A., Hiraga, Shin-ichiro, Ak, Prashanth, Benham, Craig J., Donaldson, Anne D.
प्रकाशित 2007

Interplay between DNA sequence and negative superhelicity drives R-loop structures

द्वारा Stolz, Robert, Sulthana, Shaheen, Hartono, Stella R., Malig, Maika, Benham, Craig J., Chedin, Frederic
में प्रकाशित Proc Natl Acad Sci U S A (2019)

The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli

द्वारा Du, Xiangjun, Wojtowicz, Damian, Bowers, Albert A., Levens, David, Benham, Craig J., Przytycka, Teresa M.
प्रकाशित 2013

Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression

द्वारा He, Liusheng, Liu, Juhong, Collins, Irene, Sanford, Suzanne, O'Connell, Brian, Benham, Craig J., Levens, David
प्रकाशित 2000