Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics

Por Batista-Navarro, Riza, Rak, Rafal, Ananiadou, Sophia
Publicado no J Cheminform (2015)

Argo: enabling the development of bespoke workflows and services for disease annotation

Por Batista-Navarro, Riza, Carter, Jacob, Ananiadou, Sophia
Publicado no Database (Oxford) (2016)

Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows

Por Fu, Xiao, Batista-Navarro, Riza, Rak, Rafal, Ananiadou, Sophia
Publicado no J Biomed Semantics (2015)

Using text mining techniques to extract phenotypic information from the PhenoCHF corpus

Por Alnazzawi, Noha, Thompson, Paul, Batista-Navarro, Riza, Ananiadou, Sophia
Publicado no BMC Med Inform Decis Mak (2015)

Processing biological literature with customizable Web services supporting interoperable formats

Por Rak, Rafal, Batista-Navarro, Riza Theresa, Carter, Jacob, Rowley, Andrew, Ananiadou, Sophia
Publicado em 2014

Text-mining-assisted biocuration workflows in Argo

Por Rak, Rafal, Batista-Navarro, Riza Theresa, Rowley, Andrew, Carter, Jacob, Ananiadou, Sophia
Publicado em 2014

Constructing a biodiversity terminological inventory

Por Nguyen, Nhung T. H., Soto, Axel J., Kontonatsios, Georgios, Batista-Navarro, Riza, Ananiadou, Sophia
Publicado no PLoS One (2017)

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature

Por Wang, Xinglong, Rak, Rafal, Restificar, Angelo, Nobata, Chikashi, Rupp, CJ, Batista-Navarro, Riza Theresa B, Nawaz, Raheel, Ananiadou, Sophia
Publicado em 2011

Text Mining the History of Medicine

Por Thompson, Paul, Batista-Navarro, Riza Theresa, Kontonatsios, Georgios, Carter, Jacob, Toon, Elizabeth, McNaught, John, Timmermann, Carsten, Worboys, Michael, Ananiadou, Sophia
Publicado no PLoS One (2016)

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data

Por Venkatesan, Aravind, Kim, Jee-Hyub, Talo, Francesco, Ide-Smith, Michele, Gobeill, Julien, Carter, Jacob, Batista-Navarro, Riza, Ananiadou, Sophia, Ruch, Patrick, McEntyre, Johanna
Publicado no Wellcome Open Res (2017)

biochem4j: Integrated and extensible biochemical knowledge through graph databases

Por Swainston, Neil, Batista-Navarro, Riza, Carbonell, Pablo, Dobson, Paul D., Dunstan, Mark, Jervis, Adrian J., Vinaixa, Maria, Williams, Alan R., Ananiadou, Sophia, Faulon, Jean-Loup, Mendes, Pedro, Kell, Douglas B., Scrutton, Nigel S., Breitling, Rainer
Publicado no PLoS One (2017)

BioC interoperability track overview

Por Comeau, Donald C., Batista-Navarro, Riza Theresa, Dai, Hong-Jie, Islamaj Doğan, Rezarta, Jimeno Yepes, Antonio, Khare, Ritu, Lu, Zhiyong, Marques, Hernani, Mattingly, Carolyn J., Neves, Mariana, Peng, Yifan, Rak, Rafal, Rinaldi, Fabio, Tsai, Richard Tzong-Han, Verspoor, Karin, Wiegers, Thomas C., Wu, Cathy H., Wilbur, W. John
Publicado em 2014

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

Por Kim, Sun, Islamaj Doğan, Rezarta, Chatr-Aryamontri, Andrew, Chang, Christie S., Oughtred, Rose, Rust, Jennifer, Batista-Navarro, Riza, Carter, Jacob, Ananiadou, Sophia, Matos, Sérgio, Santos, André, Campos, David, Oliveira, José Luís, Singh, Onkar, Jonnagaddala, Jitendra, Dai, Hong-Jie, Su, Emily Chia-Yu, Chang, Yung-Chun, Su, Yu-Chen, Chu, Chun-Han, Chen, Chien Chin, Hsu, Wen-Lian, Peng, Yifan, Arighi, Cecilia, Wu, Cathy H., Vijay-Shanker, K., Aydın, Ferhat, Hüsünbeyi, Zehra Melce, Özgür, Arzucan, Shin, Soo-Yong, Kwon, Dongseop, Dolinski, Kara, Tyers, Mike, Wilbur, W. John, Comeau, Donald C.
Publicado no Database (Oxford) (2016)

The CHEMDNER corpus of chemicals and drugs and its annotation principles

Por Krallinger, Martin, Rabal, Obdulia, Leitner, Florian, Vazquez, Miguel, Salgado, David, Lu, Zhiyong, Leaman, Robert, Lu, Yanan, Ji, Donghong, Lowe, Daniel M, Sayle, Roger A, Batista-Navarro, Riza Theresa, Rak, Rafal, Huber, Torsten, Rocktäschel, Tim, Matos, Sérgio, Campos, David, Tang, Buzhou, Xu, Hua, Munkhdalai, Tsendsuren, Ryu, Keun Ho, Ramanan, SV, Nathan, Senthil, Žitnik, Slavko, Bajec, Marko, Weber, Lutz, Irmer, Matthias, Akhondi, Saber A, Kors, Jan A, Xu, Shuo, An, Xin, Sikdar, Utpal Kumar, Ekbal, Asif, Yoshioka, Masaharu, Dieb, Thaer M, Choi, Miji, Verspoor, Karin, Khabsa, Madian, Giles, C Lee, Liu, Hongfang, Ravikumar, Komandur Elayavilli, Lamurias, Andre, Couto, Francisco M, Dai, Hong-Jie, Tsai, Richard Tzong-Han, Ata, Caglar, Can, Tolga, Usié, Anabel, Alves, Rui, Segura-Bedmar, Isabel, Martínez, Paloma, Oyarzabal, Julen, Valencia, Alfonso
Publicado no J Cheminform (2015)

Overview of the interactive task in BioCreative V

Por Wang, Qinghua, S. Abdul, Shabbir, Almeida, Lara, Ananiadou, Sophia, Balderas-Martínez, Yalbi I., Batista-Navarro, Riza, Campos, David, Chilton, Lucy, Chou, Hui-Jou, Contreras, Gabriela, Cooper, Laurel, Dai, Hong-Jie, Ferrell, Barbra, Fluck, Juliane, Gama-Castro, Socorro, George, Nancy, Gkoutos, Georgios, Irin, Afroza K., Jensen, Lars J., Jimenez, Silvia, Jue, Toni R., Keseler, Ingrid, Madan, Sumit, Matos, Sérgio, McQuilton, Peter, Milacic, Marija, Mort, Matthew, Natarajan, Jeyakumar, Pafilis, Evangelos, Pereira, Emiliano, Rao, Shruti, Rinaldi, Fabio, Rothfels, Karen, Salgado, David, Silva, Raquel M., Singh, Onkar, Stefancsik, Raymund, Su, Chu-Hsien, Subramani, Suresh, Tadepally, Hamsa D., Tsaprouni, Loukia, Vasilevsky, Nicole, Wang, Xiaodong, Chatr-Aryamontri, Andrew, Laulederkind, Stanley J. F., Matis-Mitchell, Sherri, McEntyre, Johanna, Orchard, Sandra, Pundir, Sangya, Rodriguez-Esteban, Raul, Van Auken, Kimberly, Lu, Zhiyong, Schaeffer, Mary, Wu, Cathy H., Hirschman, Lynette, Arighi, Cecilia N.
Publicado no Database (Oxford) (2016)