Editorial: Network Bioscience

بواسطة Antoniotti, Marco, Mishra, Bud, Pellegrini, Marco
الحاوية / القاعدة Front Genet (2019)

Automatising the analysis of stochastic biochemical time-series

بواسطة Caravagna, Giulio, De Sano, Luca, Antoniotti, Marco
الحاوية / القاعدة BMC Bioinformatics (2015)

Modeling Cumulative Biological Phenomena with Suppes-Bayes Causal Networks

بواسطة Ramazzotti, Daniele, Graudenzi, Alex, Caravagna, Giulio, Antoniotti, Marco
الحاوية / القاعدة Evol Bioinform Online (2018)

Investigating the Relation between Stochastic Differentiation, Homeostasis and Clonal Expansion in Intestinal Crypts via Multiscale Modeling

بواسطة Graudenzi, Alex, Caravagna, Giulio, De Matteis, Giovanni, Antoniotti, Marco
منشور في 2014

A coherent framework for multiresolution analysis of biological networks with “memory”: Ras pathway, cell cycle, and immune system

بواسطة Barbano, Paolo Emilio, Spivak, Marina, Feng, Jiawu, Antoniotti, Marco, Mishra, Bud
منشور في 2005

Mathematical modeling of the formation of apoptosome in intrinsic pathway of apoptosis

بواسطة Ryu, Seongho, Lin, Shih-chieh, Ugel, Nadia, Antoniotti, Marco, Mishra, Bud
منشور في 2009

Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data

بواسطة Ramazzotti, Daniele, Graudenzi, Alex, De Sano, Luca, Antoniotti, Marco, Caravagna, Giulio
الحاوية / القاعدة BMC Bioinformatics (2019)

Combined analysis of chromosomal instabilities and gene expression for colon cancer progression inference

بواسطة Cava, Claudia, Zoppis, Italo, Gariboldi, Manuela, Castiglioni, Isabella, Mauri, Giancarlo, Antoniotti, Marco
منشور في 2014

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

بواسطة Paroni, Andrea, Graudenzi, Alex, Caravagna, Giulio, Damiani, Chiara, Mauri, Giancarlo, Antoniotti, Marco
الحاوية / القاعدة BMC Bioinformatics (2016)

Reverse engineering dynamic temporal models of biological processes and their relationships

بواسطة Ramakrishnan, Naren, Tadepalli, Satish, Watson, Layne T., Helm, Richard F., Antoniotti, Marco, Mishra, Bud
منشور في 2010

GeStoDifferent: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process

بواسطة Antoniotti, Marco, Bader, Gary D., Caravagna, Giulio, Crippa, Silvia, Graudenzi, Alex, Mauri, Giancarlo
منشور في 2013

Inferring Tree Causal Models of Cancer Progression with Probability Raising

بواسطة Loohuis, Loes Olde, Caravagna, Giulio, Graudenzi, Alex, Ramazzotti, Daniele, Mauri, Giancarlo, Antoniotti, Marco, Mishra, Bud
منشور في 2014

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

بواسطة Rubinacci, Simone, Graudenzi, Alex, Caravagna, Giulio, Mauri, Giancarlo, Osborne, James, Pitt-Francis, Joe, Antoniotti, Marco
الحاوية / القاعدة Cancer Inform (2015)

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

بواسطة De Sano, Luca, Caravagna, Giulio, Ramazzotti, Daniele, Graudenzi, Alex, Mauri, Giancarlo, Mishra, Bud, Antoniotti, Marco
الحاوية / القاعدة Bioinformatics (2016)

VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples

بواسطة Ramazzotti, Daniele, Angaroni, Fabrizio, Maspero, Davide, Gambacorti-Passerini, Carlo, Antoniotti, Marco, Graudenzi, Alex, Piazza, Rocco
الحاوية / القاعدة Patterns (N Y) (2021)

An Optimal Control Framework for the Automated Design of Personalized Cancer Treatments

بواسطة Angaroni, Fabrizio, Graudenzi, Alex, Rossignolo, Marco, Maspero, Davide, Calarco, Tommaso, Piazza, Rocco, Montangero, Simone, Antoniotti, Marco
الحاوية / القاعدة Front Bioeng Biotechnol (2020)

On the Use of Topological Features of Metabolic Networks for the Classification of Cancer Samples

بواسطة Machicao, Jeaneth, Craighero, Francesco, Maspero, Davide, Angaroni, Fabrizio, Damiani, Chiara, Graudenzi, Alex, Antoniotti, Marco, Bruno, Odemir M.
الحاوية / القاعدة Curr Genomics (2021)

Algorithmic methods to infer the evolutionary trajectories in cancer progression

بواسطة Caravagna, Giulio, Graudenzi, Alex, Ramazzotti, Daniele, Sanz-Pamplona, Rebeca, De Sano, Luca, Mauri, Giancarlo, Moreno, Victor, Antoniotti, Marco, Mishra, Bud
الحاوية / القاعدة Proc Natl Acad Sci U S A (2016)

MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy

بواسطة Damiani, Chiara, Rovida, Lorenzo, Maspero, Davide, Sala, Irene, Rosato, Luca, Di Filippo, Marzia, Pescini, Dario, Graudenzi, Alex, Antoniotti, Marco, Mauri, Giancarlo
الحاوية / القاعدة Comput Struct Biotechnol J (2020)

From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research

بواسطة Mathew, Jomol P, Taylor, Barry S, Bader, Gary D, Pyarajan, Saiju, Antoniotti, Marco, Chinnaiyan, Arul M, Sander, Chris, Burakoff, Steven J, Mishra, Bud
منشور في 2007