lncRNAdb: a reference database for long noncoding RNAs

Por Amaral, Paulo P., Clark, Michael B., Gascoigne, Dennis K., Dinger, Marcel E., Mattick, John S.
Publicado em 2011

MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

Por Sunwoo, Hongjae, Dinger, Marcel E., Wilusz, Jeremy E., Amaral, Paulo P., Mattick, John S., Spector, David L.
Publicado em 2009

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

Por Castelo-Branco, Gonçalo, Amaral, Paulo P, Engström, Pär G, Robson, Samuel C, Marques, Sueli C, Bertone, Paul, Kouzarides, Tony
Publicado em 2013

Complex architecture and regulated expression of the Sox2ot locus during vertebrate development

Por Amaral, Paulo P., Neyt, Christine, Wilkins, Simon J., Askarian-Amiri, Marjan E., Sunkin, Susan M., Perkins, Andrew C., Mattick, John S.
Publicado em 2009

Androgen responsive intronic non-coding RNAs

Por Louro, Rodrigo, Nakaya, Helder I, Amaral, Paulo P, Festa, Fernanda, Sogayar, Mari C, da Silva, Aline M, Verjovski-Almeida, Sergio, Reis, Eduardo M
Publicado em 2007

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

Por Nakaya, Helder I, Amaral, Paulo P, Louro, Rodrigo, Lopes, André, Fachel, Angela A, Moreira, Yuri B, El-Jundi, Tarik A, da Silva, Aline M, Reis, Eduardo M, Verjovski-Almeida, Sergio
Publicado em 2007

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

Por Dinger, Marcel E., Amaral, Paulo P., Mercer, Tim R., Pang, Ken C., Bruce, Stephen J., Gardiner, Brooke B., Askarian-Amiri, Marjan E., Ru, Kelin, Soldà, Giulia, Simons, Cas, Sunkin, Susan M., Crowe, Mark L., Grimmond, Sean M., Perkins, Andrew C., Mattick, John S.
Publicado em 2008

The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation

Por Bell, Charles C., Amaral, Paulo P., Kalsbeek, Anton, Magor, Graham W., Gillinder, Kevin R., Tangermann, Pierre, di Lisio, Lorena, Cheetham, Seth W., Gruhl, Franziska, Frith, Jessica, Tallack, Michael R., Ru, Ke-Lin, Crawford, Joanna, Mattick, John S., Dinger, Marcel E., Perkins, Andrew C.
Publicado no Sci Rep (2016)

The Reality of Pervasive Transcription

Por Clark, Michael B., Amaral, Paulo P., Schlesinger, Felix J., Dinger, Marcel E., Taft, Ryan J., Rinn, John L., Ponting, Chris P., Stadler, Peter F., Morris, Kevin V., Morillon, Antonin, Rozowsky, Joel S., Gerstein, Mark B., Wahlestedt, Claes, Hayashizaki, Yoshihide, Carninci, Piero, Gingeras, Thomas R., Mattick, John S.
Publicado em 2011