Advances in bioinformatics and computational biology 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, proceedings /

Bằng Brazilian Symposium on Bioinformatics, Setubal, João Carlos., Almeida, Nalvo F.
Được phát hành 2013

Live neighbor-joining

Bằng Telles, Guilherme P., Araújo, Graziela S., Walter, Maria E. M. T., Brigido, Marcelo M., Almeida, Nalvo F.
Xuất bản năm BMC Bioinformatics (2018)

Draft Genome Sequences of Two Mycobacterium bovis Strains Isolated from Beef Cattle in Paraguay

Bằng Sanabria, Lidia, Lagrave, Lorena, Nishibe, Christiane, Ribas, Augusto C. A., Zumárraga, Martín J., Almeida, Nalvo F., Araújo, Flábio R.
Xuất bản năm Genome Announc (2017)

Pseudomonas syringae pv. actinidiae (PSA) Isolates from Recent Bacterial Canker of Kiwifruit Outbreaks Belong to the Same Genetic Lineage

Bằng Mazzaglia, Angelo, Studholme, David J., Taratufolo, Maria C., Cai, Rongman, Almeida, Nalvo F., Goodman, Tokia, Guttman, David S., Vinatzer, Boris A., Balestra, Giorgio M.
Được phát hành 2012

The LuxR Regulators PcoR and RfiA Co-regulate Antimicrobial Peptide and Alginate Production in Pseudomonas corrugata

Bằng Licciardello, Grazia, Caruso, Andrea, Bella, Patrizia, Gheleri, Rodolpho, Strano, Cinzia P., Anzalone, Alice, Trantas, Emmanouil A., Sarris, Panagiotis F., Almeida, Nalvo F., Catara, Vittoria
Xuất bản năm Front Microbiol (2018)

Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea

Bằng Trantas, Emmanouil A., Licciardello, Grazia, Almeida, Nalvo F., Witek, Kamil, Strano, Cinzia P., Duxbury, Zane, Ververidis, Filippos, Goumas, Dimitrios E., Jones, Jonathan D. G., Guttman, David S., Catara, Vittoria, Sarris, Panagiotis F.
Xuất bản năm Front Microbiol (2015)

Comparative Genomics of Multiple Strains of Pseudomonas cannabina pv. alisalensis, a Potential Model Pathogen of Both Monocots and Dicots

Bằng Sarris, Panagiotis F., Trantas, Emmanouil A., Baltrus, David A., Bull, Carolee T., Wechter, William Patrick, Yan, Shuangchun, Ververidis, Filippos, Almeida, Nalvo F., Jones, Corbin D., Dangl, Jeffery L., Panopoulos, Nickolas J., Vinatzer, Boris A., Goumas, Dimitrios E.
Được phát hành 2013

Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses

Bằng Patané, José S. L., Martins, Joaquim, Rangel, Luiz Thiberio, Belasque, José, Digiampietri, Luciano A., Facincani, Agda Paula, Ferreira, Rafael Marini, Jaciani, Fabrício José, Zhang, Yunzeng, Varani, Alessandro M., Almeida, Nalvo F., Wang, Nian, Ferro, Jesus A., Moreira, Leandro M., Setubal, João C.
Xuất bản năm BMC Genomics (2019)

Patterns and Processes of Mycobacterium bovis Evolution Revealed by Phylogenomic Analyses

Bằng Patané, José S.L., Martins, Joaquim, Castelão, Ana Beatriz, Nishibe, Christiane, Montera, Luciana, Bigi, Fabiana, Zumárraga, Martin J., Cataldi, Angel A., Junior, Antônio Fonseca, Roxo, Eliana, Osório, Ana Luiza A.R., Jorge, Klaudia S., Thacker, Tyler C., Almeida, Nalvo F., Araújo, Flabio R., Setubal, João C.
Xuất bản năm Genome Biol Evol (2017)

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae

Bằng Assis, Renata de A. B., Polloni, Lorraine Cristina, Patané, José S. L., Thakur, Shalabh, Felestrino, Érica B., Diaz-Caballero, Julio, Digiampietri, Luciano Antonio, Goulart, Luiz Ricardo, Almeida, Nalvo F., Nascimento, Rafael, Dandekar, Abhaya M., Zaini, Paulo A., Setubal, João C., Guttman, David S., Moreira, Leandro Marcio
Xuất bản năm Sci Rep (2017)

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

Bằng Potnis, Neha, Krasileva, Ksenia, Chow, Virginia, Almeida, Nalvo F, Patil, Prabhu B, Ryan, Robert P, Sharlach, Molly, Behlau, Franklin, Dow, J Max, Momol, MT, White, Frank F, Preston, James F, Vinatzer, Boris A, Koebnik, Ralf, Setubal, João C, Norman, David J, Staskawicz, Brian J, Jones, Jeffrey B
Được phát hành 2011

The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity

Bằng Cai, Rongman, Lewis, James, Yan, Shuangchun, Liu, Haijie, Clarke, Christopher R., Campanile, Francesco, Almeida, Nalvo F., Studholme, David J., Lindeberg, Magdalen, Schneider, David, Zaccardelli, Massimo, Setubal, Joao C., Morales-Lizcano, Nadia P., Bernal, Adriana, Coaker, Gitta, Baker, Christy, Bender, Carol L., Leman, Scotland, Vinatzer, Boris A.
Được phát hành 2011

Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1

Bằng Araújo, Cristina P., Osório, Ana Luiza A. R., Jorge, Kláudia S. G., Ramos, Carlos Alberto N., Filho, Antonio Francisco S., Vidal, Carlos Eugênio S., Roxo, Eliana, Nishibe, Christiane, Almeida, Nalvo F., Júnior, Antônio A. F., Silva, Marcio R., Neto, José Diomedes B., Cerqueira, Valíria D., Zumárraga, Martín J., Araújo, Flábio R.
Được phát hành 2014

Draft Genome Sequence of FT9, a Novel Bacillus cereus Strain Isolated from a Brazilian Thermal Spring

Bằng Raiol, Tainá, De-Souza, Marlene Teixeira, Oliveira, João Victor A., Silva, Helena Schubert da Incarnação Lima, Orem, Juliana Capella, Cavalcante, Danilo Andrade, Almeida, Nalvo F., Telles, Guilherme P., Setubal, João Carlos, Brigido, Marcelo M., Torres, Fernando A. G., Stadler, Peter S., Walter, Maria Emília M. T., Moraes, Lídia M. P.
Được phát hành 2014

Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR

Bằng Fonseca, Natasha P., Felestrino, Érica B., Caneschi, Washington L., Sanchez, Angélica B., Cordeiro, Isabella F., Lemes, Camila G.C., Assis, Renata A.B., Carvalho, Flávia M.S., Ferro, Jesus A., Varani, Alessandro M., Belasque, José, Setubal, Joao C., Telles, Guilherme P., Aguena, Deiviston S., Almeida, Nalvo F., Moreira, Leandro M.
Xuất bản năm PeerJ (2019)

Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle

Bằng Wattam, Alice R., Williams, Kelly P., Snyder, Eric E., Almeida, Nalvo F., Shukla, Maulik, Dickerman, A. W., Crasta, O. R., Kenyon, R., Lu, J., Shallom, J. M., Yoo, H., Ficht, T. A., Tsolis, R. M., Munk, C., Tapia, R., Han, C. S., Detter, J. C., Bruce, D., Brettin, T. S., Sobral, Bruno W., Boyle, Stephen M., Setubal, João C.
Được phát hành 2009

Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway

Bằng Wattam, Alice R., Inzana, Thomas J., Williams, Kelly P., Mane, Shrinivasrao P., Shukla, Maulik, Almeida, Nalvo F., Dickerman, Allan W., Mason, Steven, Moriyón, Ignacio, O’Callaghan, David, Whatmore, Adrian M., Sobral, Bruno W., Tiller, Rebekah V., Hoffmaster, Alex R., Frace, Michael A., De Castro, Cristina, Molinaro, Antonio, Boyle, Stephen M., De, Barun K., Setubal, João C.
Được phát hành 2012

Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway

Bằng Wattam, Alice R., Inzana, Thomas J., Williams, Kelly P., Mane, Shrinivasrao P., Shukla, Maulik, Almeida, Nalvo F., Dickerman, Allan W., Mason, Steven, Moriyón, Ignacio, O'Callaghan, David, Whatmore, Adrian M., Sobral, Bruno W., Tiller, Rebekah V., Hoffmaster, Alex R., Frace, Michael A., De Castro, Cristina, Molinaro, Antonio, Boyle, Stephen M., De, Barun K., Setubal, João C.
Được phát hành 2012

Vascular ligand-receptor mapping by direct combinatorial selection in cancer patients

Bằng Staquicini, Fernanda I., Cardó-Vila, Marina, Kolonin, Mikhail G., Trepel, Martin, Edwards, Julianna K., Nunes, Diana N., Sergeeva, Anna, Efstathiou, Eleni, Sun, Jessica, Almeida, Nalvo F., Tu, Shi-Ming, Botz, Gregory H., Wallace, Michael J., O’Connell, David J., Krajewski, Stan, Gershenwald, Jeffrey E., Molldrem, Jeffrey J., Flamm, Anne L., Koivunen, Erkki, Pentz, Rebecca D., Dias-Neto, Emmanuel, Setubal, João C., Cahill, Dolores J., Troncoso, Patricia, Do, Kim-Ahn, Logothetis, Christopher J., Sidman, Richard L., Pasqualini, Renata, Arap, Wadih
Được phát hành 2011

Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria

Bằng Slater, Steven C., Goldman, Barry S., Goodner, Brad, Setubal, João C., Farrand, Stephen K., Nester, Eugene W., Burr, Thomas J., Banta, Lois, Dickerman, Allan W., Paulsen, Ian, Otten, Leon, Suen, Garret, Welch, Roy, Almeida, Nalvo F., Arnold, Frank, Burton, Oliver T., Du, Zijin, Ewing, Adam, Godsy, Eric, Heisel, Sara, Houmiel, Kathryn L., Jhaveri, Jinal, Lu, Jing, Miller, Nancy M., Norton, Stacie, Chen, Qiang, Phoolcharoen, Waranyoo, Ohlin, Victoria, Ondrusek, Dan, Pride, Nicole, Stricklin, Shawn L., Sun, Jian, Wheeler, Cathy, Wilson, Lindsey, Zhu, Huijun, Wood, Derek W.
Được phát hành 2009